Inheritance diagram for sortie.tools.parfileupdater.EstablishmentBehaviors:

Public Member Functions
	EstablishmentBehaviors ()
	Constructor. More...

boolean	setSingleValueByXMLTag (String sXMLTag, String sXMLParentTag, Attributes oAttributes, String sData) throws ModelException
	Find light values for light dependent establishment and reject those for light behaviors. More...

boolean	readXMLParentTag (String sXMLTag, Attributes oAttributes) throws ModelException
	Accepts an XML parent tag (empty, no data) from the parser. More...

void	endXMLParentTag (String sXMLTag)
	Overridden to make sure tags for light dependent seed survival are not captured here. More...

Public Member Functions inherited from sortie.tools.parfileupdater.GroupBase
void	writeBehaviorsList (BufferedWriter jOut) throws IOException

void	writeDataToFile (BufferedWriter jOut) throws IOException
	Writes all data to an XML file. More...

ModelData	findObjectByXMLTag (String sXMLTag, String sXMLParentTag)
	Finds an object based on its XML tag. More...

boolean	setSingleValueByXMLTag (String sXMLTag, String sXMLParentTag, Attributes oAttributes, String sData) throws ModelException
	Sets a data object's value. More...

ArrayList< Behavior >	getBehaviorByXMLTag (String sXMLTag)
	Finds a behavior by its XML tag. More...

boolean	readXMLParentTag (String sXMLTag, Attributes oAttributes) throws ModelException
	Accepts an XML parent tag (empty, no data) from the parser. More...

void	endXMLParentTag (String sXMLTag)

boolean	parentTagOKForQueue (String sTag)
	Some tags get everything messed up in a parsing queue. More...

Static Public Attributes
static final int	MOUND = 2
	Mound substrate type. More...

static final int	GROUND = 3
	Ground substrate type. More...

Protected Attributes
ModelData []	mp_fFreshLogsFavorability
	Fresh logs favorability for each species. More...

ModelData []	mp_fDecayedLogsFavorability
	Decayed logs favorability for each species. More...

ModelData []	mp_fScarifiedSoilFavorability
	Scarified soil favorability for each species. More...

ModelData []	mp_fForestFloorLitterFavorability
	Forest floor litter favorability for each species. More...

ModelData []	mp_fForestFloorMossFavorability
	Forest floor moss favorability for each species. More...

ModelData []	mp_fTipUpFavorability
	Tip-Up favorability for each species. More...

ModelData	mp_fOptimumGLI = new ModelData("es_optimumGLI", "es_ogVal")
	Light-dependent seed survival - Optimum GLI at which establishment is not reduced for each species. More...

ModelData	mp_fLowSlope = new ModelData("es_lowSlope", "es_lsVal")
	Light-dependent seed survival - Slope of establishment dropoff below the optimum GLI for each species. More...

ModelData	mp_fHighSlope = new ModelData("es_highSlope", "es_hsVal")
	Light-dependent seed survival - Slope of establishment dropoff above the optimum GLI for each species. More...

ModelData	mp_fLightExtCoeffNoDmg = new ModelData("li_lightExtinctionCoefficient", "li_lecVal")
	Light-dependent seed survival - Light extinction coefficient of undamaged trees. More...

ModelData	mp_fLightExtCoeffPartDmg = new ModelData("es_lightExtCoeffPartDmg", "es_lecpdVal")
	Light-dependent seed survival - Light extinction coefficient of medium damaged trees. More...

ModelData	mp_fLightExtCoeffFullDmg = new ModelData("es_lightExtCoeffFullDmg", "es_lecfdVal")
	Light-dependent seed survival - Light extinction coefficient of complete damaged trees. More...

ModelData	mp_fSnagClass1LightExtinctionCoefficient
	Light-dependent seed survival - snag age class 1 light extinction coefficient. More...

ModelData	mp_fSnagClass2LightExtinctionCoefficient
	Light-dependent seed survival - snag age class 2 light extinction coefficient. More...

ModelData	mp_fSnagClass3LightExtinctionCoefficient
	Light-dependent seed survival - snag age class 3 light extinction coefficient. More...

ModelData	mp_fDensDepSlope = new ModelData("es_densDepSlope", "es_ddsVal")
	Density-dependent seed survival - Density-dependence slope. More...

ModelData	mp_fDensDepSteepness = new ModelData("es_densDepSteepness", "es_ddstVal")
	Density-dependent seed survival - Density-dependence steepness. More...

ModelData	mp_fDensDepMinNeighHeight = new ModelData("es_densDepMinNeighHeight", "es_ddmnhVal")
	Conspecific tree density-dependent seed survival - minimum neighbor height. More...

ModelData	m_fLightHeight = new ModelData("es_lightHeight")
	Light-dependent seed survival - Height at which to calculate light. More...

ModelData	m_fBeamFractionOfGlobalRadiation = new ModelData("li_beamFractGlobalRad")
	Light-dependent seed survival - Beam fraction of global radiation. More...

ModelData	m_fClearSkyTransmissionCoefficient = new ModelData("li_clearSkyTransCoeff")
	Light-dependent seed survival - Clear sky transmission coefficient. More...

ModelData	m_fMinSunAngle = new ModelData("li_minSunAngle")
	Light-dependent seed survival - Minimum sun angle in radians for GLI. More...

ModelData	m_fMoundProportion = new ModelData("es_moundProportion")
	Proportion of the plot which is mound. More...

ModelData	m_fMeanMoundHeight = new ModelData("es_meanMoundHeight")
	Mean mound height, in m. More...

ModelData	m_fMoundStdDev = new ModelData("es_moundStdDev")
	Standard deviation of mound height. More...

ModelData	m_fMeanFreshLogHeight = new ModelData("es_meanFreshLogHeight")
	Mean log height, in m. More...

ModelData	m_fFreshLogStdDev = new ModelData("es_freshLogStdDev")
	Standard deviation of fresh log height, in m. More...

ModelData	m_fDensDepSearchRadius = new ModelData("es_densDepSearchRadius")
	Conspecific tree density-dependent seed survival - neighbor search radius. More...

ModelData	m_iMaxRespite = new ModelData("es_maxRespite")
	Number of years of respite from fern shading. More...

ModelData	m_iNumAziDiv = new ModelData("li_numAziGrids")
	Light-dependent seed survival - Number of azimuth divisions for GLI. More...

ModelData	m_iNumAltDiv = new ModelData("li_numAltGrids")
	Light-dependent seed survival - Number of altitude divisions for GLI. More...

ModelData	m_iJulianDayGrowthStarts = new ModelData("li_julianDayGrowthStarts")
	Light-dependent seed survival - Start of growing season as Julian day. More...

ModelData	m_iJulianDayGrowthEnds = new ModelData("li_julianDayGrowthEnds")
	Light-dependent seed survival - End of growing season as Julian day. More...

ModelData	m_iSnagAgeClass1 = new ModelData("li_snagAgeClass1")
	Light-dependent seed survival - Upper age limit of snag size class 1. More...

ModelData	m_iSnagAgeClass2 = new ModelData("li_snagAgeClass2")
	Light-dependent seed survival - Upper age limit of snag size class 2. More...

Protected Attributes inherited from sortie.tools.parfileupdater.GroupBase
ArrayList< ModelData >	mp_oAllData
	All data for this object. More...

String	m_sXMLTag
	Highest-level XML tag for this object. More...

Behavior []	mp_oChildBehaviors

Additional Inherited Members
Protected Member Functions inherited from sortie.tools.parfileupdater.GroupBase
void	loadDataMember (ModelData oData)
	Takes some data and adds it to all applicable behaviors in their string buffer. More...

Constructor & Destructor Documentation

◆ EstablishmentBehaviors()

sortie.tools.parfileupdater.EstablishmentBehaviors.EstablishmentBehaviors ( )

Constructor.

Member Function Documentation

◆ endXMLParentTag()

void sortie.tools.parfileupdater.EstablishmentBehaviors.endXMLParentTag ( String sXMLTag )

Overridden to make sure tags for light dependent seed survival are not captured here.

◆ readXMLParentTag()

boolean sortie.tools.parfileupdater.EstablishmentBehaviors.readXMLParentTag	(	String	sXMLTag,
		Attributes	oAttributes
	)		throws ModelException

Accepts an XML parent tag (empty, no data) from the parser.

This function finds light values for light dependent establishment and rejects those for light behaviors.

Parameters

sXMLTag	The XML tag.
oAttributes	The attributes of this object.

Exceptions

ModelException if data is missing or invalid.

◆ setSingleValueByXMLTag()

boolean sortie.tools.parfileupdater.EstablishmentBehaviors.setSingleValueByXMLTag	(	String	sXMLTag,
		String	sXMLParentTag,
		Attributes	oAttributes,
		String	sData
	)		throws ModelException

Find light values for light dependent establishment and reject those for light behaviors.

Parameters

sXMLTag	XML tag of object to assign.
sXMLParentTag	The immediate parent tag that sXMLTag is within.
oAttributes	Ignored.
sData	Data to assign.

Returns: true if assigned, or false if not.

Exceptions

ModelException not thrown here.

Member Data Documentation

◆ GROUND

final int sortie.tools.parfileupdater.EstablishmentBehaviors.GROUND = 3

static

Ground substrate type.

◆ m_fBeamFractionOfGlobalRadiation

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fBeamFractionOfGlobalRadiation = new ModelData("li_beamFractGlobalRad")

protected

Light-dependent seed survival - Beam fraction of global radiation.

◆ m_fClearSkyTransmissionCoefficient

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fClearSkyTransmissionCoefficient = new ModelData("li_clearSkyTransCoeff")

protected

Light-dependent seed survival - Clear sky transmission coefficient.

◆ m_fDensDepSearchRadius

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fDensDepSearchRadius = new ModelData("es_densDepSearchRadius")

protected

Conspecific tree density-dependent seed survival - neighbor search radius.

◆ m_fFreshLogStdDev

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fFreshLogStdDev = new ModelData("es_freshLogStdDev")

protected

Standard deviation of fresh log height, in m.

◆ m_fLightHeight

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fLightHeight = new ModelData("es_lightHeight")

protected

Light-dependent seed survival - Height at which to calculate light.

◆ m_fMeanFreshLogHeight

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fMeanFreshLogHeight = new ModelData("es_meanFreshLogHeight")

protected

Mean log height, in m.

◆ m_fMeanMoundHeight

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fMeanMoundHeight = new ModelData("es_meanMoundHeight")

protected

Mean mound height, in m.

◆ m_fMinSunAngle

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fMinSunAngle = new ModelData("li_minSunAngle")

protected

Light-dependent seed survival - Minimum sun angle in radians for GLI.

◆ m_fMoundProportion

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fMoundProportion = new ModelData("es_moundProportion")

protected

Proportion of the plot which is mound.

◆ m_fMoundStdDev

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_fMoundStdDev = new ModelData("es_moundStdDev")

protected

Standard deviation of mound height.

◆ m_iJulianDayGrowthEnds

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_iJulianDayGrowthEnds = new ModelData("li_julianDayGrowthEnds")

protected

Light-dependent seed survival - End of growing season as Julian day.

◆ m_iJulianDayGrowthStarts

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_iJulianDayGrowthStarts = new ModelData("li_julianDayGrowthStarts")

protected

Light-dependent seed survival - Start of growing season as Julian day.

◆ m_iMaxRespite

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_iMaxRespite = new ModelData("es_maxRespite")

protected

Number of years of respite from fern shading.

◆ m_iNumAltDiv

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_iNumAltDiv = new ModelData("li_numAltGrids")

protected

Light-dependent seed survival - Number of altitude divisions for GLI.

◆ m_iNumAziDiv

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_iNumAziDiv = new ModelData("li_numAziGrids")

protected

Light-dependent seed survival - Number of azimuth divisions for GLI.

◆ m_iSnagAgeClass1

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_iSnagAgeClass1 = new ModelData("li_snagAgeClass1")

protected

Light-dependent seed survival - Upper age limit of snag size class 1.

◆ m_iSnagAgeClass2

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.m_iSnagAgeClass2 = new ModelData("li_snagAgeClass2")

protected

Light-dependent seed survival - Upper age limit of snag size class 2.

◆ MOUND

final int sortie.tools.parfileupdater.EstablishmentBehaviors.MOUND = 2

static

Mound substrate type.

◆ mp_fDecayedLogsFavorability

ModelData [] sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fDecayedLogsFavorability

protected

Decayed logs favorability for each species.

◆ mp_fDensDepMinNeighHeight

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fDensDepMinNeighHeight = new ModelData("es_densDepMinNeighHeight", "es_ddmnhVal")

protected

Conspecific tree density-dependent seed survival - minimum neighbor height.

◆ mp_fDensDepSlope

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fDensDepSlope = new ModelData("es_densDepSlope", "es_ddsVal")

protected

Density-dependent seed survival - Density-dependence slope.

◆ mp_fDensDepSteepness

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fDensDepSteepness = new ModelData("es_densDepSteepness", "es_ddstVal")

protected

Density-dependent seed survival - Density-dependence steepness.

◆ mp_fForestFloorLitterFavorability

ModelData [] sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fForestFloorLitterFavorability

protected

Forest floor litter favorability for each species.

◆ mp_fForestFloorMossFavorability

ModelData [] sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fForestFloorMossFavorability

protected

Forest floor moss favorability for each species.

◆ mp_fFreshLogsFavorability

ModelData [] sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fFreshLogsFavorability

protected

Fresh logs favorability for each species.

◆ mp_fHighSlope

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fHighSlope = new ModelData("es_highSlope", "es_hsVal")

protected

Light-dependent seed survival - Slope of establishment dropoff above the optimum GLI for each species.

◆ mp_fLightExtCoeffFullDmg

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fLightExtCoeffFullDmg = new ModelData("es_lightExtCoeffFullDmg", "es_lecfdVal")

protected

Light-dependent seed survival - Light extinction coefficient of complete damaged trees.

◆ mp_fLightExtCoeffNoDmg

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fLightExtCoeffNoDmg = new ModelData("li_lightExtinctionCoefficient", "li_lecVal")

protected

Light-dependent seed survival - Light extinction coefficient of undamaged trees.

◆ mp_fLightExtCoeffPartDmg

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fLightExtCoeffPartDmg = new ModelData("es_lightExtCoeffPartDmg", "es_lecpdVal")

protected

Light-dependent seed survival - Light extinction coefficient of medium damaged trees.

◆ mp_fLowSlope

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fLowSlope = new ModelData("es_lowSlope", "es_lsVal")

protected

Light-dependent seed survival - Slope of establishment dropoff below the optimum GLI for each species.

◆ mp_fOptimumGLI

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fOptimumGLI = new ModelData("es_optimumGLI", "es_ogVal")

protected

Light-dependent seed survival - Optimum GLI at which establishment is not reduced for each species.

◆ mp_fScarifiedSoilFavorability

ModelData [] sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fScarifiedSoilFavorability

protected

Scarified soil favorability for each species.

◆ mp_fSnagClass1LightExtinctionCoefficient

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fSnagClass1LightExtinctionCoefficient

protected

Initial value:

= new

ModelData("li_snag1LightExtinctionCoefficient", "li_s1lecVal")

Light-dependent seed survival - snag age class 1 light extinction coefficient.

◆ mp_fSnagClass2LightExtinctionCoefficient

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fSnagClass2LightExtinctionCoefficient

protected

Initial value:

= new

ModelData("li_snag2LightExtinctionCoefficient", "li_s2lecVal")

Light-dependent seed survival - snag age class 2 light extinction coefficient.

◆ mp_fSnagClass3LightExtinctionCoefficient

ModelData sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fSnagClass3LightExtinctionCoefficient

protected

Initial value:

= new

ModelData("li_snag3LightExtinctionCoefficient", "li_s3lecVal")

Light-dependent seed survival - snag age class 3 light extinction coefficient.

◆ mp_fTipUpFavorability

ModelData [] sortie.tools.parfileupdater.EstablishmentBehaviors.mp_fTipUpFavorability

protected

Tip-Up favorability for each species.

The documentation for this class was generated from the following file:

tools/parfileupdater/EstablishmentBehaviors.java

Public Member Functions

Static Public Attributes

Protected Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ EstablishmentBehaviors()

Member Function Documentation

◆ endXMLParentTag()

◆ readXMLParentTag()

◆ setSingleValueByXMLTag()

Member Data Documentation

◆ GROUND

◆ m_fBeamFractionOfGlobalRadiation

◆ m_fClearSkyTransmissionCoefficient

◆ m_fDensDepSearchRadius

◆ m_fFreshLogStdDev

◆ m_fLightHeight

◆ m_fMeanFreshLogHeight

◆ m_fMeanMoundHeight

◆ m_fMinSunAngle

◆ m_fMoundProportion

◆ m_fMoundStdDev

◆ m_iJulianDayGrowthEnds

◆ m_iJulianDayGrowthStarts

◆ m_iMaxRespite

◆ m_iNumAltDiv

◆ m_iNumAziDiv

◆ m_iSnagAgeClass1

◆ m_iSnagAgeClass2

◆ MOUND

◆ mp_fDecayedLogsFavorability

◆ mp_fDensDepMinNeighHeight

◆ mp_fDensDepSlope

◆ mp_fDensDepSteepness

◆ mp_fForestFloorLitterFavorability

◆ mp_fForestFloorMossFavorability

◆ mp_fFreshLogsFavorability

◆ mp_fHighSlope

◆ mp_fLightExtCoeffFullDmg

◆ mp_fLightExtCoeffNoDmg

◆ mp_fLightExtCoeffPartDmg

◆ mp_fLowSlope

◆ mp_fOptimumGLI

◆ mp_fScarifiedSoilFavorability

◆ mp_fSnagClass1LightExtinctionCoefficient

◆ mp_fSnagClass2LightExtinctionCoefficient

◆ mp_fSnagClass3LightExtinctionCoefficient

◆ mp_fTipUpFavorability