This holds all data relating to allometry. More...

Inheritance diagram for sortie.data.funcgroups.Allometry:

Public Member Functions
	Allometry (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString)
	Constructor. More...

void	validateData (TreePopulation oPop) throws ModelException
	This makes sure all data is valid and can be used to run the model. More...

void	changeOfSpeciesName (String sOldSpecies, String sNewSpecies)
	Updates the lambda neighbor names when a species name is changed. More...

void	copySpecies (int iSpeciesCopyFrom, int iSpeciesCopyTo) throws ModelException
	Updates the lambda when a species is copied. More...

void	changeOfSpecies (int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) throws ModelException
	Overridden to set up enums. More...

ArrayList< BehaviorParameterDisplay >	formatDataForDisplay (TreePopulation oPop)
	Formats data for display in a set of JTables. More...

ModelVector	getWhatSeedlingHDFunction ()

void	setWhatSeedlingHDFunction (ModelVector p_iWhatSeedlingHDFunction)

ModelVector	getWhatSaplingHDFunction ()

void	setWhatSaplingHDFunction (ModelVector p_iWhatSaplingHDFunction)

ModelVector	getWhatAdultHDFunction ()

void	setWhatAdultHDFunction (ModelVector p_iWhatAdultHDFunction)

ModelVector	getWhatAdultCRDFunction ()

void	setWhatAdultCRDFunction (ModelVector p_iWhatAdultCRDFunction)

ModelVector	getWhatSaplingCRDFunction ()

void	setWhatSaplingCRDFunction (ModelVector p_iWhatSaplingCRDFunction)

ModelVector	getWhatAdultCDHFunction ()

void	setWhatAdultCDHFunction (ModelVector p_iWhatAdultCDHFunction)

ModelVector	getWhatSaplingCDHFunction ()

void	setWhatSaplingCDHFunction (ModelVector p_iWhatSaplingCDHFunction)

void	callSetupDialog (JDialog jParent, MainWindow oMain)
	Override to call allometry's dialog. More...

void	writeParametersToTextFile (FileWriter jOut, TreePopulation oPop) throws IOException
	Overridden to make sure function choices show up as well. More...

Public Member Functions inherited from sortie.data.funcgroups.Behavior
GUIManager	getGUIManager ()

	Behavior (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpFileString)
	Constructor. More...

abstract void	validateData (TreePopulation oPop) throws ModelException
	Override this to implement data checking. More...

void	callSetupDialog (JDialog jParent, MainWindow oMain)
	Override this to call a specific setup dialog for this behavior. More...

int	getNumberOfDataObjects ()
	Gets the number of managed data objects. More...

ModelData	getDataObject (int iInd)
	Gets the managed data object at a particular index. More...

void	validate () throws ModelException
	Behavior performs an internal check to make sure its settings are consistent and logical. More...

void	setListPosition (int iListPosition) throws ModelException
	Sets the behavior list position. More...

int	getListPosition ()
	Gets the behavior list position. More...

String	getXMLParametersRoot ()
	Gets the XML parameter root string. More...

int	getNumberNewDataMembers ()

DataMember	getNewTreeDataMember (int iIndex) throws ModelException

void	setCanApplyTo (int iType, boolean bCanApply)
	Sets whether this behavior can apply to a given tree type. More...

String	getParameterFileBehaviorName ()
	Gets the parameter file name for this behavior. More...

double	getVersion ()
	Gets behavior's parameter file version. More...

double	getMinimumVersion ()
	Gets behavior's parameter file minimum version. More...

String	getDescriptor ()
	Gets the descriptor string. More...

String	getHelpFileString ()
	Gets the help file UD. More...

void	setDescriptor (String s)
	Sets the descriptor string. More...

int	getNumberOfCombos ()
	Gets the number of species/type combos to which this behavior applies. More...

int	getNumberOfGrids ()
	Gets the number of grids to which this behavior applies. More...

void	deleteSpeciesTypeCombo (int iIndex) throws ModelException
	Deletes the SpeciesTypeCombo at the given index. More...

void	deleteSpeciesTypeCombo (SpeciesTypeCombo oCombo) throws ModelException
	Deletes a SpeciesTypeCombo. More...

void	clearSpeciesTypeCombos ()
	Empties the species/type combo list. More...

SpeciesTypeCombo	getSpeciesTypeCombo (int iIndex) throws ModelException
	Returns the SpeciesTypeCombo at the given index of the species/type combo list. More...

Grid	getGrid (int iIndex) throws ModelException
	Returns the Grid at the given index of the grid applies to list. More...

ModelData	getRequiredData (int iIndex)
	Returns the required data object at a given index. More...

int	getNumberOfRequiredDataObjects ()
	Gets the number of required data objects for this behavior. More...

void	addSpeciesTypeCombo (SpeciesTypeCombo oCombo) throws ModelException
	Adds a new species/type combo to the list to which this behavior applies. More...

void	addGrid (Grid oGrid, boolean bReplace)
	Adds a new Grid to the list to which this behavior applies. More...

void	addRequiredData (ModelData oData)
	Adds a piece of required data to the list. More...

boolean []	getWhichSpeciesUsed (TreePopulation oPop)
	Returns which species to which this behavior is applied. More...

boolean	setVectorValueByXMLTag (String sXMLTag, String sXMLParentTag, ArrayList< String > p_oData, String[] p_sChildXMLTags, boolean[] p_bAppliesTo, Attributes oParentAttributes, Attributes[] p_oAttributes) throws ModelException
	Sets a data vector's value. More...

boolean	setSingleValueByXMLTag (String sXMLTag, String sXMLParentTag, Attributes oAttributes, Object oData) throws ModelException
	Sets a data object's value. More...

ModelData	findObjectByXMLTag (String sXMLTag)
	Finds an object based on its XML tag. More...

void	copySpecies (int iSpeciesCopyFrom, int iSpeciesCopyTo) throws ModelException
	Copies one species to another. More...

void	writeXML (BufferedWriter jOut, TreePopulation oPop) throws ModelException
	Writes the XML data to a parameter file for the behaviors owned by this object. More...

void	writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop) throws java.io.IOException, ModelException
	Writes a set of species-specific float values to a parameter file. More...

void	writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop, boolean[] p_bFlags) throws java.io.IOException, ModelException
	Writes a set of species-specific values to a parameter file for a certain subset of species. More...

void	readXMLParentTag (String sXMLTag, Attributes oAttributes) throws ModelException
	Accepts an XML parent tag (empty, no data) from the parser. More...

void	changeOfSpeciesName (String sOldSpecies, String sNewSpecies)
	Performs any necessary tasks associated with changing the name of a species. More...

void	changeOfSpecies (int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) throws ModelException
	Triggered when there is a change in the species list. More...

boolean	getMustHaveTrees ()
	Gets whether this behavior must have trees. More...

ModelData	findObjectByDescriptor (String sDescriptor)
	Finds an object based on its descriptor. More...

void	writeBehaviorNode (BufferedWriter out, TreePopulation oPop) throws ModelException
	Writes behavior tags to the parameter file. More...

ArrayList< BehaviorParameterDisplay >	formatDataForDisplay (TreePopulation oPop)
	Formats data for display in a set of JTables. More...

String	getAppliedToForDisplay (TreePopulation oPop)
	Get which species/types this behavior applies to, in a display-friendly format truncated to 250 chars. More...

void	readDataFromDisplay (ArrayList< BehaviorParameterDisplay > oData, TreePopulation oPop) throws ModelException
	Reads in data from the parameter display window. More...

boolean	canBeDuplicated ()
	Whether or not this behavior can be duplicated in the run. More...

void	endOfParameterFileRead ()
	Called at the end of the parameter file read process. More...

void	changeOfPlotResolution (float fOldX, float fOldY, float fNewX, float fNewY) throws ModelException
	Performs any tasks associated with a change of plot resolution. More...

setupType	getSetupType ()

void	writeParametersToTextFile (FileWriter jOut, TreePopulation oPop) throws IOException
	Writes the parameters for the behavior to file, using the same system as the basic parameter display and entry system. More...

Protected Member Functions
void	doSetup (TreePopulation oPop) throws ModelException
	Does setup. More...

Protected Member Functions inherited from sortie.data.funcgroups.Behavior
void	setSingleValue (ModelData oDataMember, Object oData) throws ModelException
	Sets the value of a single data member. More...

BehaviorParameterDisplay	formatTable (ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, TreePopulation oPop)
	Turns vector groups of data objects into a set of tables for display. More...

Protected Attributes
ModelVector	mp_fMaxCanopyHeight
	Species-specific - maximum tree height. More...

ModelVector	mp_fSlopeOfAsymptoticHeight
	Species-specific - slope of asymptotic height. More...

ModelVector	mp_fCrownRadExp
	Species-specific - exponent in crown radius equation. More...

ModelVector	mp_fCrownDepthExp
	Species-specific - exponent in crown height equation. More...

ModelVector	mp_fSlopeOfAsympCrownRad
	Species-specific - slope of asymptotic crown radius. More...

ModelVector	mp_fMaxCrownRad
	Species-specific - maximum crown radius in standard equation. More...

ModelVector	mp_fSlopeOfAsympCrownDpth
	Species-specific - slope of the asymptotic crown height. More...

ModelVector	mp_fSlopeOfHeightDiam10
	Species-specific - slope of the height-diam10 relationship. More...

ModelVector	mp_fDiam10ToDbhSlope
	Species-specific - slope of relationship of diam10 to dbh. More...

ModelVector	mp_fDiam10ToDbhIntercept
	Species-specific - intercept of relationship of diam10 to dbh. More...

ModelVector	mp_fAdultLinearSlope
	Slope of linear height-DBH relationship for adults - not required if the linear relationship isn't used. More...

ModelVector	mp_fAdultLinearIntercept
	Intercept of linear height-DBH relationship for adults - not required if the linear relationship isn't used. More...

ModelVector	mp_fSaplingLinearSlope
	Slope of linear height-DBH relationship for saplings - not required if the linear relationship isn't used. More...

ModelVector	mp_fSaplingLinearIntercept
	Intercept of linear height-DBH relationship for saplings - not required if the linear relationship isn't used. More...

ModelVector	mp_fSeedlingLinearSlope
	Slope of linear height-DBH relationship for seedlings - not required if the linear relationship isn't used. More...

ModelVector	mp_fSeedlingLinearIntercept
	Intercept of linear height-DBH relationship for seedlings - not required if the linear relationship isn't used. More...

ModelVector	mp_fAdultReverseLinearSlope
	Slope of reverse linear height-DBH relationship for adults - not required if the reverse linear relationship isn't used. More...

ModelVector	mp_fAdultReverseLinearIntercept
	Intercept of reverse linear height-DBH relationship for adults - not required if the reverse linear relationship isn't used. More...

ModelVector	mp_fSaplingReverseLinearSlope
	Slope of reverse linear height-DBH relationship for saplings - not required if the reverse linear relationship isn't used. More...

ModelVector	mp_fSaplingReverseLinearIntercept
	Intercept of reverse linear height-DBH relationship for saplings - not required if the reverse linear relationship isn't used. More...

ModelVector	mp_fSeedlingReverseLinearSlope
	Slope of reverse linear height-DBH relationship for seedlings - not required if the reverse linear relationship isn't used. More...

ModelVector	mp_fSeedlingReverseLinearIntercept
	Intercept of reverse linear height-DBH relationship for seedlings - not required if the reverse linear relationship isn't used. More...

ModelVector	mp_iWhatSeedlingHDFunction
	Which relationship to use to relate height to diam10 for seedlings - 0 = standard, 1 = linear, 2 = reverse linear. More...

ModelVector	mp_iWhatSaplingHDFunction
	Which relationship to use to relate height to DBH for saplings - 0 = standard, 1 = linear, 2 = reverse linear. More...

ModelVector	mp_iWhatAdultHDFunction
	Which relationship to use to relate height to DBH for adults - 0 = standard, 1 = linear, 2 = reverse linear. More...

ModelVector	mp_iWhatAdultCRDFunction
	Which relationship to use to relate DBH to crown radius for adults - 0 = standard, 1 = Chapman-Richards, 2 = non-spatial density dependent. More...

ModelVector	mp_iWhatSaplingCRDFunction
	Which relationship to use to relate DBH to crown radius for saplings - 0 = standard, 1 = Chapman-Richards. More...

ModelVector	mp_iWhatAdultCDHFunction
	Which relationship to use to relate height to crown depth for adults - 0 = standard, 1 = Chapman-Richards, 2 = non-spatial density dependent. More...

ModelVector	mp_iWhatSaplingCDHFunction
	Which relationship to use to relate height to crown depth for saplings - 0 = standard, 1 = Chapman-Richards. More...

ModelVector	mp_fCRCrownRadIntercept
	Intercept of Chapman-Richards crown radius-DBH relationship - not required if the Chapman-Richards crown radius relationship isn't used. More...

ModelVector	mp_fCRAsympCrownRad
	Asymptotic crown radius of Chapman-Richards crown radius-DBH relationship - not required if the Chapman-Richards crown radius relationship isn't used. More...

ModelVector	mp_fCRCrownRadShape1
	Shape parameter 1 (b) of Chapman-Richards crown radius-DBH relationship. More...

ModelVector	mp_fCRCrownRadShape2
	Shape parameter 2 (c) of Chapman-Richards crown radius-DBH relationship. More...

ModelVector	mp_fCRCrownHtIntercept
	Intercept of Chapman-Richards crown depth-height relationship - not required if the Chapman-Richards crown depth relationship isn't used. More...

ModelVector	mp_fCRAsympCrownHt
	Asymptotic crown radius of Chapman-Richards crown depth-height relationship - not required if the Chapman-Richards crown depth relationship isn't used. More...

ModelVector	mp_fCRCrownHtShape1
	Shape parameter 1 (b) of Chapman-Richards crown depth-height relationship. More...

ModelVector	mp_fCRCrownHtShape2
	Shape parameter 2 (c) of Chapman-Richards crown depth-height relationship. More...

ModelVector	mp_fPowerA
	"a" parameter of power function height-diam relationship - not required if this function isn't used More...

ModelVector	mp_fPowerB
	"b" parameter of power function height-diam relationship - not required if this function isn't used More...

ModelVector	mp_fNonSpatDensDepInstCDA
	Non-spatial density dependent instrumental crown depth "a". More...

ModelVector	mp_fNonSpatDensDepInstCDB
	Non-spatial density dependent instrumental crown depth "b". More...

ModelVector	mp_fNonSpatDensDepInstCDC
	Non-spatial density dependent instrumental crown depth "c". More...

ModelVector	mp_fNonSpatDensDepInstCDD
	Non-spatial density dependent instrumental crown depth "d". More...

ModelVector	mp_fNonSpatDensDepInstCDE
	Non-spatial density dependent instrumental crown depth "e". More...

ModelVector	mp_fNonSpatDensDepInstCDF
	Non-spatial density dependent instrumental crown depth "f". More...

ModelVector	mp_fNonSpatDensDepInstCDG
	Non-spatial density dependent instrumental crown depth "g". More...

ModelVector	mp_fNonSpatDensDepInstCDH
	Non-spatial density dependent instrumental crown depth "h". More...

ModelVector	mp_fNonSpatDensDepInstCDI
	Non-spatial density dependent instrumental crown depth "i". More...

ModelVector	mp_fNonSpatDensDepInstCDJ
	Non-spatial density dependent instrumental crown depth "j". More...

ModelVector	mp_fNonSpatExpDensDepCRD1
	Non-spatial exponential density dependent crown radius "D1". More...

ModelVector	mp_fNonSpatExpDensDepCRA
	Non-spatial exponential density dependent crown radius "a". More...

ModelVector	mp_fNonSpatExpDensDepCRB
	Non-spatial exponential density dependent crown radius "b". More...

ModelVector	mp_fNonSpatExpDensDepCRC
	Non-spatial exponential density dependent crown radius "c". More...

ModelVector	mp_fNonSpatExpDensDepCRD
	Non-spatial exponential density dependent crown radius "d". More...

ModelVector	mp_fNonSpatExpDensDepCRE
	Non-spatial exponential density dependent crown radius "e". More...

ModelVector	mp_fNonSpatExpDensDepCRF
	Non-spatial exponential density dependent crown radius "f". More...

ModelVector	mp_fNonSpatDensDepInstCRA
	Non-spatial density dependent instrumental crown radius "a". More...

ModelVector	mp_fNonSpatDensDepInstCRB
	Non-spatial density dependent instrumental crown radius "b". More...

ModelVector	mp_fNonSpatDensDepInstCRC
	Non-spatial density dependent instrumental crown radius "c". More...

ModelVector	mp_fNonSpatDensDepInstCRD
	Non-spatial density dependent instrumental crown radius "d". More...

ModelVector	mp_fNonSpatDensDepInstCRE
	Non-spatial density dependent instrumental crown radius "e". More...

ModelVector	mp_fNonSpatDensDepInstCRF
	Non-spatial density dependent instrumental crown radius "f". More...

ModelVector	mp_fNonSpatDensDepInstCRG
	Non-spatial density dependent instrumental crown radius "g". More...

ModelVector	mp_fNonSpatDensDepInstCRH
	Non-spatial density dependent instrumental crown radius "h". More...

ModelVector	mp_fNonSpatDensDepInstCRI
	Non-spatial density dependent instrumental crown radius "i". More...

ModelVector	mp_fNonSpatDensDepInstCRJ
	Non-spatial density dependent instrumental crown radius "j". More...

ModelVector	mp_fNonSpatLogDensDepCRDA
	Non-spatial logistic density dependent crown depth "a". More...

ModelVector	mp_fNonSpatLogDensDepCRDB
	Non-spatial logistic density dependent crown depth "b". More...

ModelVector	mp_fNonSpatLogDensDepCRDC
	Non-spatial logistic density dependent crown depth "c". More...

ModelVector	mp_fNonSpatLogDensDepCRDD
	Non-spatial logistic density dependent crown depth "d". More...

ModelVector	mp_fNonSpatLogDensDepCRDE
	Non-spatial logistic density dependent crown depth "e". More...

ModelVector	mp_fNonSpatLogDensDepCRDF
	Non-spatial logistic density dependent crown depth "f". More...

ModelVector	mp_fNonSpatLogDensDepCRDG
	Non-spatial logistic density dependent crown depth "g". More...

ModelVector	mp_fNCIMaxCrownRadius
	NCI crown radius - Maximum potential crown radius. More...

ModelVector	mp_fNCICRAlpha
	NCI crown radius alpha. More...

ModelVector	mp_fNCICRBeta
	NCI crown radius beta. More...

ModelVector	mp_fNCICRGamma
	NCI crown radius gamma. More...

ModelVector	mp_fNCICRMaxCrowdingRadius
	NCI crown radius maximum search distance for neighbors, in meters. More...

ModelVector	mp_fNCICRN
	NCI crown radius crowding effect n. More...

ModelVector	mp_fNCICRD
	NCI crown radius size effect d. More...

ModelVector	mp_fNCICRMinNeighborDBH
	The minimum DBH, in cm, of neighbors to be included in NCI calculations. More...

ModelVector	mp_fNCIMaxCrownDepth
	Maximum crown depth value. More...

ModelVector	mp_fNCICDAlpha
	NCI crown depth alpha. More...

ModelVector	mp_fNCICDBeta
	NCI crown depth beta. More...

ModelVector	mp_fNCICDGamma
	NCI crown depth gamma. More...

ModelVector	mp_fNCICDMaxCrowdingRadius
	NCI crown depth maximum search distance for neighbors, in meters. More...

ModelVector	mp_fNCICDN
	NCI crown depth crowding effect n. More...

ModelVector	mp_fNCICDD
	NCI crown depth size effect d. More...

ModelVector	mp_fNCICDMinNeighborDBH
	The minimum DBH, in cm, of neighbors to be included in NCI calculations. More...

Protected Attributes inherited from sortie.data.funcgroups.Behavior
GUIManager	m_oManager
	GUIManager object. More...

BehaviorTypeBase	m_oParent
	Parent manager. More...

ArrayList< ModelData >	mp_oAllData = new ArrayList<ModelData>()
	All data for this object. More...

ArrayList< SpeciesTypeCombo >	mp_oTreesAppliesTo = new ArrayList<SpeciesTypeCombo>(0)
	A set of SpeciesTypeCombo objects to which this behavior is applied - or none if it is not applied to trees. More...

ArrayList< Integer >	mp_iGridsAppliesTo = new ArrayList<Integer>(0)
	A set of hashcodes of the Grids to which this behavior is applied - or none if it is not applied to grids. More...

ArrayList< DataMember >	mp_oNewTreeDataMembers = new ArrayList<DataMember>(0)
	The new tree data members that this behavior adds, above and beyond the basic tree population data members. More...

boolean	m_bCanBeDuplicated = true
	Whether or not this behavior can have multiple copies in a run or not. More...

String	m_sDescriptor = ""
	This is what will be displayed as the name of a given behavior in the GUI. More...

String	m_sParFileTag = ""
	String which is used to identify this behavior in the parameter file. More...

String	m_sXMLRootString = ""
	XML tag to surround this behavior's data. More...

String	m_sHelpFileString = ""
	Help file topic identifier string. More...

boolean []	mp_bCanApplyToTreeType
	For each tree type, whether or not this behavior can be applied to it. More...

double	m_fVersion = 1.0
	Version of this behavior. More...

double	m_fMinVersion = 1.0
	Minimum version of this behavior. More...

int	m_iListPosition = -1
	This behavior's position in the behavior list. More...

setupType	m_iBehaviorSetupType

Additional Inherited Members
Static Public Member Functions inherited from sortie.data.funcgroups.Behavior
static void	setVectorValues (ModelVector oData, Float[] p_fValuesToSet, boolean[] p_bAppliesTo)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector oData, Float[] p_fValuesToSet)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector oData, Double[] p_fValuesToSet, boolean[] p_bAppliesTo)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector oData, Double[] p_fValuesToSet)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector oData, Integer[] p_iValuesToSet, boolean[] p_bAppliesTo)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector oData, String[] p_sValuesToSet)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector oData, String[] p_sValuesToSet, boolean[] p_bAppliesTo)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector oData, Integer[] p_iValuesToSet)
	Sets the values for vector variables. More...

static void	setVectorValues (ModelVector p_oData, ArrayList< String > p_oValuesToSet, boolean[] p_bAppliesTo) throws ModelException
	Sets the values for vector variables. More...

static void	writeDataToFile (BufferedWriter ojOut, ModelData oData) throws java.io. IOException
	Writes a piece of data to an XML file. More...

static Object []	formatBlankHeaderRow (Object[][] p_oTable)
	Creates a blank header row for a table. More...

static Object [][]	formatDataAsComboBox (Object[][] p_oExisting, ModelEnum oToFormat)
	Adds a value with combo box formatting to an Object array for display in a JTable. More...

static String	formatComboBoxString (ModelEnum oToFormat)
	Formats a combo box string from a ModelEnum. More...

static void	addDataObjectToDisplayArrays (ModelData p_oDataObject, ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, boolean[] p_bAppliesTo)
	Adds a data object to the arrays which will eventually display run parameters in a set of tables. More...

static Object [][]	addDataToArray (Object[][] p_oExistingArray, Object[] p_oAddArray)
	Adds an Object array to an existing Object array. More...

static Object [][]	formatDataForTable (Object[][] p_oExisting, ModelFloat oToFormat)
	Formats and adds a value into an Object array suitable for placing in a JTable. More...

static Object [][]	formatDataForTable (Object[][] p_oExisting, ModelInt oToFormat)
	Formats and adds a value into an Object array suitable for placing in a JTable. More...

static Object [][]	formatDataForTable (Object[][] p_oExisting, ModelString oToFormat)
	Formats and adds a value into an Object array suitable for placing in a JTable. More...

static Object [][]	formatDataForTable (Object[][] p_oExisting, ModelVector oToFormat)
	Formats a vector of values into an object array and adds it to another Object array suitable for placing in a JTable. More...

static Object [][]	formatDataForTable (Object[][] p_oExisting, ModelVector oToFormat, boolean[] p_bWhichSpecies)
	Formats a vector of values into a plain vector suitable for placing in a JTable and adds it to a vector of vectors at the end. More...

static Object []	formatSpeciesHeaderRow (boolean[] p_bUsed, TreePopulation oPop)
	Creates an object array of strings consisting of species names, suitable for including in the parameter entry table. More...

static void	ensureSize (ArrayList<?> list, int size)
	Ensure an ArrayList is at least a specific size. More...

Public Attributes inherited from sortie.data.funcgroups.Behavior
boolean	m_bMustHaveTrees = true
	If true, and a tree has no species/type combos, it automatically becomes disabled. More...

Static Protected Member Functions inherited from sortie.data.funcgroups.Behavior
static boolean	boolArraysEqual (boolean[] p_bArrayOne, boolean[] p_bArrayTwo)
	Tests two boolean arrays for equality. More...

Detailed Description

This holds all data relating to allometry.

Copyright: Copyright (c) Charles D. Canham 2011 Company: Cary Institute of Ecosystem Studies

Author: Lora E. Murphy

Version: 1.1

Edit history:
---------------—
December 8, 2011: Wiped the slate clean for version 7 (LEM)

Constructor & Destructor Documentation

◆ Allometry()

sortie.data.funcgroups.Allometry.Allometry	(	GUIManager	oManager,
		BehaviorTypeBase	oParent,
		String	sDescriptor,
		String	sParFileTag,
		String	sXMLRootString
	)

Constructor.

Parameters

oManager	GUIManager object
oParent	Parent managing object.
sDescriptor	The name of the behavior for the user.
sParFileTag	String which is used to identify this behavior in the parameter file.
sXMLRootString	XML tag to surround this behavior's data.

Member Function Documentation

◆ callSetupDialog()

void sortie.data.funcgroups.Allometry.callSetupDialog	(	JDialog	jParent,
		MainWindow	oMain
	)

Override to call allometry's dialog.

◆ changeOfSpecies()

void sortie.data.funcgroups.Allometry.changeOfSpecies	(	int	iOldNumSpecies,
		int []	p_iIndexer,
		String []	p_sNewSpecies
	)		throws ModelException

Overridden to set up enums.

◆ changeOfSpeciesName()

void sortie.data.funcgroups.Allometry.changeOfSpeciesName	(	String	sOldSpecies,
		String	sNewSpecies
	)

Updates the lambda neighbor names when a species name is changed.

Parameters

sOldSpecies	String Old name of the species, with underscores instead of spaces (like the species names would come from the tree population)
sNewSpecies	String New name of the species, with underscores instead of spaces (like the species names would come from the tree population)

◆ copySpecies()

void sortie.data.funcgroups.Allometry.copySpecies	(	int	iSpeciesCopyFrom,
		int	iSpeciesCopyTo
	)		throws ModelException

Updates the lambda when a species is copied.

The lambdas for that neighbor are made identical to those being copied as well as entries for species within the lambda.

Parameters

iSpeciesCopyFrom	int Species to copy.
iSpeciesCopyTo	int Species that is the copy.

Exceptions

ModelException if there is a problem.

◆ doSetup()

void sortie.data.funcgroups.Allometry.doSetup ( TreePopulation oPop ) throws ModelException

protected

Does setup.

Sets up the enums for the function lists and the NCI lambdas.

Parameters

oPop	TreePopulation object.

Exceptions

ModelException passing through from called functions.

◆ formatDataForDisplay()

ArrayList<BehaviorParameterDisplay> sortie.data.funcgroups.Allometry.formatDataForDisplay ( TreePopulation oPop )

Formats data for display in a set of JTables.

This is overridden so that only those values appropriate to the allometry functions that have been chosen are used.

Parameters

oPop	TreePopulation object.

Returns: Vector of vectors suitable for creating a set of JTables, or null if there is no data to display.

◆ getWhatAdultCDHFunction()

ModelVector sortie.data.funcgroups.Allometry.getWhatAdultCDHFunction ( )

◆ getWhatAdultCRDFunction()

ModelVector sortie.data.funcgroups.Allometry.getWhatAdultCRDFunction ( )

◆ getWhatAdultHDFunction()

ModelVector sortie.data.funcgroups.Allometry.getWhatAdultHDFunction ( )

◆ getWhatSaplingCDHFunction()

ModelVector sortie.data.funcgroups.Allometry.getWhatSaplingCDHFunction ( )

◆ getWhatSaplingCRDFunction()

ModelVector sortie.data.funcgroups.Allometry.getWhatSaplingCRDFunction ( )

◆ getWhatSaplingHDFunction()

ModelVector sortie.data.funcgroups.Allometry.getWhatSaplingHDFunction ( )

◆ getWhatSeedlingHDFunction()

ModelVector sortie.data.funcgroups.Allometry.getWhatSeedlingHDFunction ( )

◆ setWhatAdultCDHFunction()

void sortie.data.funcgroups.Allometry.setWhatAdultCDHFunction ( ModelVector p_iWhatAdultCDHFunction )

◆ setWhatAdultCRDFunction()

void sortie.data.funcgroups.Allometry.setWhatAdultCRDFunction ( ModelVector p_iWhatAdultCRDFunction )

◆ setWhatAdultHDFunction()

void sortie.data.funcgroups.Allometry.setWhatAdultHDFunction ( ModelVector p_iWhatAdultHDFunction )

◆ setWhatSaplingCDHFunction()

void sortie.data.funcgroups.Allometry.setWhatSaplingCDHFunction ( ModelVector p_iWhatSaplingCDHFunction )

◆ setWhatSaplingCRDFunction()

void sortie.data.funcgroups.Allometry.setWhatSaplingCRDFunction ( ModelVector p_iWhatSaplingCRDFunction )

◆ setWhatSaplingHDFunction()

void sortie.data.funcgroups.Allometry.setWhatSaplingHDFunction ( ModelVector p_iWhatSaplingHDFunction )

◆ setWhatSeedlingHDFunction()

void sortie.data.funcgroups.Allometry.setWhatSeedlingHDFunction ( ModelVector p_iWhatSeedlingHDFunction )

◆ validateData()

void sortie.data.funcgroups.Allometry.validateData ( TreePopulation oPop ) throws ModelException

This makes sure all data is valid and can be used to run the model.

Exceptions

ModelException

in any of the following cases:

There is any value less than or equal to zero in any of the following vectors, when used:
- mp_fSlopeOfAsympCrownRad
- mp_fDiam10ToDbhConversion
- mp_fSlopeOfAsympCrownDpth
- Max crown radius
- mp_fMaxCanopyHeight
- mp_fSlopeOfAsymptoticHeight
A value in any slope is 0 (if it is being used)

Parameters

oPop Not used.

◆ writeParametersToTextFile()

void sortie.data.funcgroups.Allometry.writeParametersToTextFile	(	FileWriter	jOut,
		TreePopulation	oPop
	)		throws IOException

Overridden to make sure function choices show up as well.

Member Data Documentation

◆ mp_fAdultLinearIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fAdultLinearIntercept

protected

Initial value:

= new ModelVector(
      "Adult Linear Function Intercept", "tr_adultLinearIntercept",
      "tr_aliVal", 0, ModelVector.FLOAT, true)

Intercept of linear height-DBH relationship for adults - not required if the linear relationship isn't used.

◆ mp_fAdultLinearSlope

ModelVector sortie.data.funcgroups.Allometry.mp_fAdultLinearSlope

protected

Initial value:

= new ModelVector(
      "Adult Linear Function Slope", "tr_adultLinearSlope",
      "tr_alsVal", 0, ModelVector.FLOAT, true)

Slope of linear height-DBH relationship for adults - not required if the linear relationship isn't used.

◆ mp_fAdultReverseLinearIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fAdultReverseLinearIntercept

protected

Initial value:

= new ModelVector(
      "Adult Reverse Linear Function Intercept",
      "tr_adultReverseLinearIntercept", "tr_arliVal", 0, ModelVector.FLOAT, true)

Intercept of reverse linear height-DBH relationship for adults - not required if the reverse linear relationship isn't used.

◆ mp_fAdultReverseLinearSlope

ModelVector sortie.data.funcgroups.Allometry.mp_fAdultReverseLinearSlope

protected

Initial value:

= new ModelVector(
      "Adult Reverse Linear Function Slope", "tr_adultReverseLinearSlope",
      "tr_arlsVal", 0, ModelVector.FLOAT, true)

Slope of reverse linear height-DBH relationship for adults - not required if the reverse linear relationship isn't used.

◆ mp_fCRAsympCrownHt

ModelVector sortie.data.funcgroups.Allometry.mp_fCRAsympCrownHt

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Asymptotic Crown Depth",
      "tr_chRichCrownHtAsymp", "tr_crchaVal", 0, ModelVector.FLOAT, true)

Asymptotic crown radius of Chapman-Richards crown depth-height relationship - not required if the Chapman-Richards crown depth relationship isn't used.

◆ mp_fCRAsympCrownRad

ModelVector sortie.data.funcgroups.Allometry.mp_fCRAsympCrownRad

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Asymptotic Crown Radius",
      "tr_chRichCrownRadAsymp", "tr_crcraVal", 0, ModelVector.FLOAT, true)

Asymptotic crown radius of Chapman-Richards crown radius-DBH relationship - not required if the Chapman-Richards crown radius relationship isn't used.

◆ mp_fCRCrownHtIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fCRCrownHtIntercept

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Crown Depth Intercept",
      "tr_chRichCrownHtIntercept", "tr_crchiVal", 0, ModelVector.FLOAT, true)

Intercept of Chapman-Richards crown depth-height relationship - not required if the Chapman-Richards crown depth relationship isn't used.

◆ mp_fCRCrownHtShape1

ModelVector sortie.data.funcgroups.Allometry.mp_fCRCrownHtShape1

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Crown Depth Shape 1 (b)",
      "tr_chRichCrownHtShape1b", "tr_crchs1bVal", 0, ModelVector.FLOAT, true)

Shape parameter 1 (b) of Chapman-Richards crown depth-height relationship.

not required if the C-R crown depth relationship isn't used

◆ mp_fCRCrownHtShape2

ModelVector sortie.data.funcgroups.Allometry.mp_fCRCrownHtShape2

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Crown Depth Shape 2 (c)",
      "tr_chRichCrownHtShape2c", "tr_crchs2cVal", 0, ModelVector.FLOAT, true)

Shape parameter 2 (c) of Chapman-Richards crown depth-height relationship.

not required if the C-R crown depth relationship isn't used

◆ mp_fCRCrownRadIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fCRCrownRadIntercept

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Crown Radius Intercept",
      "tr_chRichCrownRadIntercept", "tr_crcriVal", 0, ModelVector.FLOAT, true)

Intercept of Chapman-Richards crown radius-DBH relationship - not required if the Chapman-Richards crown radius relationship isn't used.

◆ mp_fCRCrownRadShape1

ModelVector sortie.data.funcgroups.Allometry.mp_fCRCrownRadShape1

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Crown Radius Shape 1 (b)",
      "tr_chRichCrownRadShape1b", "tr_crcrs1bVal", 0, ModelVector.FLOAT, true)

Shape parameter 1 (b) of Chapman-Richards crown radius-DBH relationship.

not required if the C-R crown radius relationship isn't used

◆ mp_fCRCrownRadShape2

ModelVector sortie.data.funcgroups.Allometry.mp_fCRCrownRadShape2

protected

Initial value:

= new ModelVector(
      "Chapman-Richards Crown Radius Shape 2 (c)",
      "tr_chRichCrownRadShape2c", "tr_crcrs2cVal", 0, ModelVector.FLOAT, true)

Shape parameter 2 (c) of Chapman-Richards crown radius-DBH relationship.

not required if the C-R crown radius relationship isn't used

◆ mp_fCrownDepthExp

ModelVector sortie.data.funcgroups.Allometry.mp_fCrownDepthExp

protected

Initial value:

= new ModelVector(
      "Crown Height Exponent", "tr_stdCrownHtExp", "tr_scheVal", 0,
      ModelVector.FLOAT, true)

Species-specific - exponent in crown height equation.

◆ mp_fCrownRadExp

ModelVector sortie.data.funcgroups.Allometry.mp_fCrownRadExp

protected

Initial value:

= new ModelVector(
      "Crown Radius Exponent", "tr_stdCrownRadExp", "tr_screVal", 0,
      ModelVector.FLOAT, true)

Species-specific - exponent in crown radius equation.

◆ mp_fDiam10ToDbhIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fDiam10ToDbhIntercept

protected

Initial value:

= new ModelVector(
      "Intercept of DBH to Diameter at 10 cm Relationship",
      "tr_interceptDiam10ToDBH", "tr_idtdVal", 0, ModelVector.FLOAT, true)

Species-specific - intercept of relationship of diam10 to dbh.

◆ mp_fDiam10ToDbhSlope

ModelVector sortie.data.funcgroups.Allometry.mp_fDiam10ToDbhSlope

protected

Initial value:

= new ModelVector(
      "Slope of DBH to Diameter at 10 cm Relationship",
      "tr_conversionDiam10ToDBH",
      "tr_cdtdVal", 0, ModelVector.FLOAT, true)

Species-specific - slope of relationship of diam10 to dbh.

◆ mp_fMaxCanopyHeight

ModelVector sortie.data.funcgroups.Allometry.mp_fMaxCanopyHeight

protected

Initial value:

= new ModelVector(
      "Maximum Tree Height, in meters", "tr_canopyHeight", "tr_chVal", 0,
      ModelVector.FLOAT, true)

Species-specific - maximum tree height.

◆ mp_fMaxCrownRad

ModelVector sortie.data.funcgroups.Allometry.mp_fMaxCrownRad

protected

Initial value:

= new ModelVector(
      "Maximum Crown Radius (Standard) (m)", "tr_stdMaxCrownRad", "tr_smcrVal",
      0, ModelVector.FLOAT, true)

Species-specific - maximum crown radius in standard equation.

◆ mp_fNCICDAlpha

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICDAlpha

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Alpha", 
      "tr_nciCDAlpha", "tr_ncdaVal", 0, ModelVector.FLOAT)

NCI crown depth alpha.

◆ mp_fNCICDBeta

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICDBeta

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Beta", 
      "tr_nciCDBeta", "tr_ncdbVal", 0, ModelVector.FLOAT)

NCI crown depth beta.

◆ mp_fNCICDD

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICDD

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Size Effect \"d\"", 
      "tr_nciCDSizeEffectD", "tr_ncdsedVal", 0, ModelVector.FLOAT)

NCI crown depth size effect d.

◆ mp_fNCICDGamma

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICDGamma

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Gamma", 
      "tr_nciCDGamma", "tr_ncdgVal", 0, ModelVector.FLOAT)

NCI crown depth gamma.

◆ mp_fNCICDMaxCrowdingRadius

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICDMaxCrowdingRadius

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Max Search Distance for Neighbors (m)", 
      "tr_nciCDMaxCrowdingRadius", "tr_ncdmcrVal", 0, ModelVector.FLOAT)

NCI crown depth maximum search distance for neighbors, in meters.

◆ mp_fNCICDMinNeighborDBH

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICDMinNeighborDBH

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Minimum Neighbor DBH (cm)", 
      "tr_nciCDMinNeighborDBH", "tr_ncdmndVal", 0, ModelVector.FLOAT, true)

The minimum DBH, in cm, of neighbors to be included in NCI calculations.

Array is sized total number of species.

◆ mp_fNCICDN

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICDN

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Crowding Effect \"n\"", 
      "tr_nciCDCrowdingN", "tr_nccdnVal", 0, ModelVector.FLOAT)

NCI crown depth crowding effect n.

◆ mp_fNCICRAlpha

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICRAlpha

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Alpha", 
      "tr_nciCRAlpha", "tr_ncraVal", 0, ModelVector.FLOAT)

NCI crown radius alpha.

◆ mp_fNCICRBeta

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICRBeta

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Beta", 
      "tr_nciCRBeta", "tr_ncrbVal", 0, ModelVector.FLOAT)

NCI crown radius beta.

◆ mp_fNCICRD

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICRD

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Size Effect \"d\"", 
      "tr_nciCRSizeEffectD", "tr_ncrsedVal", 0, ModelVector.FLOAT)

NCI crown radius size effect d.

◆ mp_fNCICRGamma

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICRGamma

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Gamma", 
      "tr_nciCRGamma", "tr_ncrgVal", 0, ModelVector.FLOAT)

NCI crown radius gamma.

◆ mp_fNCICRMaxCrowdingRadius

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICRMaxCrowdingRadius

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Max Search Distance for Neighbors (m)", 
      "tr_nciCRMaxCrowdingRadius", "tr_ncrmcrVal", 0, ModelVector.FLOAT)

NCI crown radius maximum search distance for neighbors, in meters.

◆ mp_fNCICRMinNeighborDBH

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICRMinNeighborDBH

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Minimum Neighbor DBH (cm)", 
      "tr_nciCRMinNeighborDBH", "tr_ncrmndVal", 0, ModelVector.FLOAT, true)

The minimum DBH, in cm, of neighbors to be included in NCI calculations.

Array is sized total number of species.

◆ mp_fNCICRN

ModelVector sortie.data.funcgroups.Allometry.mp_fNCICRN

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Crowding Effect \"n\"", 
      "tr_nciCRCrowdingN", "tr_nccrnVal", 0, ModelVector.FLOAT)

NCI crown radius crowding effect n.

◆ mp_fNCIMaxCrownDepth

ModelVector sortie.data.funcgroups.Allometry.mp_fNCIMaxCrownDepth

protected

Initial value:

= new ModelVector(
      "NCI Crown Depth - Max Potential Depth (m)", 
      "tr_nciCDMaxCrownDepth", "tr_ncdmcrVal", 0, ModelVector.FLOAT)

Maximum crown depth value.

◆ mp_fNCIMaxCrownRadius

ModelVector sortie.data.funcgroups.Allometry.mp_fNCIMaxCrownRadius

protected

Initial value:

= new ModelVector(
      "NCI Crown Radius - Max Potential Radius (m)", 
      "tr_nciCRMaxCrownRadius", "tr_ncrmcrVal", 0, ModelVector.FLOAT)

NCI crown radius - Maximum potential crown radius.

◆ mp_fNonSpatDensDepInstCDA

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDA

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"a\"", 
      "tr_nonSpatDensDepInstCHA", "tr_nsddichaVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "a".

◆ mp_fNonSpatDensDepInstCDB

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDB

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"b\"", 
      "tr_nonSpatDensDepInstCHB", "tr_nsddichbVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "b".

◆ mp_fNonSpatDensDepInstCDC

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDC

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"c\"", 
      "tr_nonSpatDensDepInstCHC", "tr_nsddichcVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "c".

◆ mp_fNonSpatDensDepInstCDD

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDD

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"d\"", 
      "tr_nonSpatDensDepInstCHD", "tr_nsddichdVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "d".

◆ mp_fNonSpatDensDepInstCDE

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDE

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"e\"", 
      "tr_nonSpatDensDepInstCHE", "tr_nsddicheVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "e".

◆ mp_fNonSpatDensDepInstCDF

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDF

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"f\"", 
      "tr_nonSpatDensDepInstCHF", "tr_nsddichfVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "f".

◆ mp_fNonSpatDensDepInstCDG

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDG

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"g\"", 
      "tr_nonSpatDensDepInstCHG", "tr_nsddichgVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "g".

◆ mp_fNonSpatDensDepInstCDH

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDH

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"h\"", 
      "tr_nonSpatDensDepInstCHH", "tr_nsddichhVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "h".

◆ mp_fNonSpatDensDepInstCDI

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDI

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"i\"", 
      "tr_nonSpatDensDepInstCHI", "tr_nsddichiVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "i".

◆ mp_fNonSpatDensDepInstCDJ

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCDJ

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Depth \"j\"", 
      "tr_nonSpatDensDepInstCHJ", "tr_nsddichjVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown depth "j".

◆ mp_fNonSpatDensDepInstCRA

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRA

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"a\"", 
      "tr_nonSpatDensDepInstCRA", "tr_nsddicraVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "a".

◆ mp_fNonSpatDensDepInstCRB

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRB

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"b\"", 
      "tr_nonSpatDensDepInstCRB", "tr_nsddicrbVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "b".

◆ mp_fNonSpatDensDepInstCRC

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRC

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"c\"", 
      "tr_nonSpatDensDepInstCRC", "tr_nsddicrcVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "c".

◆ mp_fNonSpatDensDepInstCRD

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRD

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"d\"", 
      "tr_nonSpatDensDepInstCRD", "tr_nsddicrdVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "d".

◆ mp_fNonSpatDensDepInstCRE

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRE

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"e\"", 
      "tr_nonSpatDensDepInstCRE", "tr_nsddicreVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "e".

◆ mp_fNonSpatDensDepInstCRF

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRF

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"f\"", 
      "tr_nonSpatDensDepInstCRF", "tr_nsddicrfVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "f".

◆ mp_fNonSpatDensDepInstCRG

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRG

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"g\"", 
      "tr_nonSpatDensDepInstCRG", "tr_nsddicrgVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "g".

◆ mp_fNonSpatDensDepInstCRH

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRH

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"h\"", 
      "tr_nonSpatDensDepInstCRH", "tr_nsddicrhVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "h".

◆ mp_fNonSpatDensDepInstCRI

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRI

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"i\"", 
      "tr_nonSpatDensDepInstCRI", "tr_nsddicriVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "i".

◆ mp_fNonSpatDensDepInstCRJ

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatDensDepInstCRJ

protected

Initial value:

= new ModelVector(
      "Non-Spatial Density Dep. Inst. Crown Radius \"j\"", 
      "tr_nonSpatDensDepInstCRJ", "tr_nsddicrjVal", 0, ModelVector.FLOAT, true)

Non-spatial density dependent instrumental crown radius "j".

◆ mp_fNonSpatExpDensDepCRA

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatExpDensDepCRA

protected

Initial value:

= new ModelVector(
      "Non-Spatial Exp. Density Dep. Crown Radius \"a\"", 
      "tr_nonSpatExpDensDepCRA", "tr_nseddcraVal", 0, ModelVector.FLOAT, true)

Non-spatial exponential density dependent crown radius "a".

◆ mp_fNonSpatExpDensDepCRB

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatExpDensDepCRB

protected

Initial value:

= new ModelVector(
      "Non-Spatial Exp. Density Dep. Crown Radius \"b\"", 
      "tr_nonSpatExpDensDepCRB", "tr_nseddcrbVal", 0, ModelVector.FLOAT, true)

Non-spatial exponential density dependent crown radius "b".

◆ mp_fNonSpatExpDensDepCRC

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatExpDensDepCRC

protected

Initial value:

= new ModelVector(
      "Non-Spatial Exp. Density Dep. Crown Radius \"c\"", 
      "tr_nonSpatExpDensDepCRC", "tr_nseddcrcVal", 0, ModelVector.FLOAT, true)

Non-spatial exponential density dependent crown radius "c".

◆ mp_fNonSpatExpDensDepCRD

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatExpDensDepCRD

protected

Initial value:

= new ModelVector(
      "Non-Spatial Exp. Density Dep. Crown Radius \"d\"", 
      "tr_nonSpatExpDensDepCRD", "tr_nseddcrdVal", 0, ModelVector.FLOAT, true)

Non-spatial exponential density dependent crown radius "d".

◆ mp_fNonSpatExpDensDepCRD1

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatExpDensDepCRD1

protected

Initial value:

= new ModelVector(
      "Non-Spatial Exp. Density Dep. Crown Radius \"D1\"", 
      "tr_nonSpatExpDensDepCRD1", "tr_nseddcrd1Val", 0, ModelVector.FLOAT, true)

Non-spatial exponential density dependent crown radius "D1".

◆ mp_fNonSpatExpDensDepCRE

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatExpDensDepCRE

protected

Initial value:

= new ModelVector(
      "Non-Spatial Exp. Density Dep. Crown Radius \"e\"", 
      "tr_nonSpatExpDensDepCRE", "tr_nseddcreVal", 0, ModelVector.FLOAT, true)

Non-spatial exponential density dependent crown radius "e".

◆ mp_fNonSpatExpDensDepCRF

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatExpDensDepCRF

protected

Initial value:

= new ModelVector(
      "Non-Spatial Exp. Density Dep. Crown Radius \"f\"", 
      "tr_nonSpatExpDensDepCRF", "tr_nseddcrfVal", 0, ModelVector.FLOAT, true)

Non-spatial exponential density dependent crown radius "f".

◆ mp_fNonSpatLogDensDepCRDA

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatLogDensDepCRDA

protected

Initial value:

= new ModelVector(
      "Non-Spatial Log. Density Dep. Crown Depth \"a\"", 
      "tr_nonSpatLogDensDepCHA", "tr_nslddchaVal", 0, ModelVector.FLOAT, true)

Non-spatial logistic density dependent crown depth "a".

◆ mp_fNonSpatLogDensDepCRDB

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatLogDensDepCRDB

protected

Initial value:

= new ModelVector(
      "Non-Spatial Log. Density Dep. Crown Depth \"b\"", 
      "tr_nonSpatLogDensDepCHB", "tr_nslddchbVal", 0, ModelVector.FLOAT, true)

Non-spatial logistic density dependent crown depth "b".

◆ mp_fNonSpatLogDensDepCRDC

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatLogDensDepCRDC

protected

Initial value:

= new ModelVector(
      "Non-Spatial Log. Density Dep. Crown Depth \"c\"", 
      "tr_nonSpatLogDensDepCHC", "tr_nslddchcVal", 0, ModelVector.FLOAT, true)

Non-spatial logistic density dependent crown depth "c".

◆ mp_fNonSpatLogDensDepCRDD

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatLogDensDepCRDD

protected

Initial value:

= new ModelVector(
      "Non-Spatial Log. Density Dep. Crown Depth \"d\"", 
      "tr_nonSpatLogDensDepCHD", "tr_nslddchdVal", 0, ModelVector.FLOAT, true)

Non-spatial logistic density dependent crown depth "d".

◆ mp_fNonSpatLogDensDepCRDE

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatLogDensDepCRDE

protected

Initial value:

= new ModelVector(
      "Non-Spatial Log. Density Dep. Crown Depth \"e\"", 
      "tr_nonSpatLogDensDepCHE", "tr_nslddcheVal", 0, ModelVector.FLOAT, true)

Non-spatial logistic density dependent crown depth "e".

◆ mp_fNonSpatLogDensDepCRDF

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatLogDensDepCRDF

protected

Initial value:

= new ModelVector(
      "Non-Spatial Log. Density Dep. Crown Depth \"f\"", 
      "tr_nonSpatLogDensDepCHF", "tr_nslddchfVal", 0, ModelVector.FLOAT, true)

Non-spatial logistic density dependent crown depth "f".

◆ mp_fNonSpatLogDensDepCRDG

ModelVector sortie.data.funcgroups.Allometry.mp_fNonSpatLogDensDepCRDG

protected

Initial value:

= new ModelVector(
      "Non-Spatial Log. Density Dep. Crown Depth \"g\"", 
      "tr_nonSpatLogDensDepCHG", "tr_nslddchgVal", 0, ModelVector.FLOAT, true)

Non-spatial logistic density dependent crown depth "g".

◆ mp_fPowerA

ModelVector sortie.data.funcgroups.Allometry.mp_fPowerA

protected

Initial value:

= new ModelVector(
      "Power Function \"a\"", "tr_saplingPowerA", "tr_sapaVal", 0,
      ModelVector.FLOAT, true)

"a" parameter of power function height-diam relationship - not required if this function isn't used

◆ mp_fPowerB

ModelVector sortie.data.funcgroups.Allometry.mp_fPowerB

protected

Initial value:

= new ModelVector(
      "Power Function Exponent \"b\"", "tr_saplingPowerB", "tr_sapbVal", 0,
      ModelVector.FLOAT, true)

"b" parameter of power function height-diam relationship - not required if this function isn't used

◆ mp_fSaplingLinearIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fSaplingLinearIntercept

protected

Initial value:

= new ModelVector(
      "Sapling Linear Function Intercept", "tr_saplingLinearIntercept",
      "tr_saliVal", 0, ModelVector.FLOAT, true)

Intercept of linear height-DBH relationship for saplings - not required if the linear relationship isn't used.

◆ mp_fSaplingLinearSlope

ModelVector sortie.data.funcgroups.Allometry.mp_fSaplingLinearSlope

protected

Initial value:

= new ModelVector(
      "Sapling Linear Function Slope", "tr_saplingLinearSlope",
      "tr_salsVal", 0, ModelVector.FLOAT, true)

Slope of linear height-DBH relationship for saplings - not required if the linear relationship isn't used.

◆ mp_fSaplingReverseLinearIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fSaplingReverseLinearIntercept

protected

Initial value:

= new ModelVector(
      "Sapling Reverse Linear Function Intercept",
      "tr_saplingReverseLinearIntercept", "tr_sarliVal", 0, ModelVector.FLOAT, true)

Intercept of reverse linear height-DBH relationship for saplings - not required if the reverse linear relationship isn't used.

◆ mp_fSaplingReverseLinearSlope

ModelVector sortie.data.funcgroups.Allometry.mp_fSaplingReverseLinearSlope

protected

Initial value:

= new ModelVector(
      "Sapling Reverse Linear Function Slope", "tr_saplingReverseLinearSlope",
      "tr_sarlsVal", 0, ModelVector.FLOAT, true)

Slope of reverse linear height-DBH relationship for saplings - not required if the reverse linear relationship isn't used.

◆ mp_fSeedlingLinearIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fSeedlingLinearIntercept

protected

Initial value:

= new ModelVector(
      "Seedling Linear Function Intercept", "tr_seedlingLinearIntercept",
      "tr_seliVal", 0, ModelVector.FLOAT, true)

Intercept of linear height-DBH relationship for seedlings - not required if the linear relationship isn't used.

◆ mp_fSeedlingLinearSlope

ModelVector sortie.data.funcgroups.Allometry.mp_fSeedlingLinearSlope

protected

Initial value:

= new ModelVector(
      "Seedling Linear Function Slope", "tr_seedlingLinearSlope",
      "tr_selsVal", 0, ModelVector.FLOAT, true)

Slope of linear height-DBH relationship for seedlings - not required if the linear relationship isn't used.

◆ mp_fSeedlingReverseLinearIntercept

ModelVector sortie.data.funcgroups.Allometry.mp_fSeedlingReverseLinearIntercept

protected

Initial value:

= new ModelVector(
      "Seedling Reverse Linear Function Intercept",
      "tr_seedlingReverseLinearIntercept", "tr_serliVal", 0, ModelVector.FLOAT, true)

Intercept of reverse linear height-DBH relationship for seedlings - not required if the reverse linear relationship isn't used.

◆ mp_fSeedlingReverseLinearSlope

ModelVector sortie.data.funcgroups.Allometry.mp_fSeedlingReverseLinearSlope

protected

Initial value:

= new ModelVector(
      "Seedling Reverse Linear Function Slope", "tr_seedlingReverseLinearSlope",
      "tr_serlsVal", 0, ModelVector.FLOAT, true)

Slope of reverse linear height-DBH relationship for seedlings - not required if the reverse linear relationship isn't used.

◆ mp_fSlopeOfAsympCrownDpth

ModelVector sortie.data.funcgroups.Allometry.mp_fSlopeOfAsympCrownDpth

protected

Initial value:

= new ModelVector(
      "Slope of Asymptotic Crown Height", "tr_stdAsympCrownHt",
      "tr_sachVal", 0, ModelVector.FLOAT, true)

Species-specific - slope of the asymptotic crown height.

◆ mp_fSlopeOfAsympCrownRad

ModelVector sortie.data.funcgroups.Allometry.mp_fSlopeOfAsympCrownRad

protected

Initial value:

= new ModelVector(
      "Slope of Asymptotic Crown Radius", "tr_stdAsympCrownRad", "tr_sacrVal",
      0, ModelVector.FLOAT, true)

Species-specific - slope of asymptotic crown radius.

◆ mp_fSlopeOfAsymptoticHeight

ModelVector sortie.data.funcgroups.Allometry.mp_fSlopeOfAsymptoticHeight

protected

Initial value:

= new ModelVector(
      "Slope of Asymptotic Height", "tr_slopeOfAsymHeight", "tr_soahVal",
      0, ModelVector.FLOAT, true)

Species-specific - slope of asymptotic height.

◆ mp_fSlopeOfHeightDiam10

ModelVector sortie.data.funcgroups.Allometry.mp_fSlopeOfHeightDiam10

protected

Initial value:

= new ModelVector(
      "Slope of Height-Diameter at 10 cm Relationship",
      "tr_slopeOfHeight-Diam10", "tr_sohdVal", 0, ModelVector.FLOAT, true)

Species-specific - slope of the height-diam10 relationship.

◆ mp_iWhatAdultCDHFunction

ModelVector sortie.data.funcgroups.Allometry.mp_iWhatAdultCDHFunction

protected

Initial value:

= new ModelVector(
      "Adult Crown Depth-Height Function",
      "tr_whatAdultCrownHeightHeight", "tr_wachhVal", 0, ModelVector.MODEL_ENUM, true)

Which relationship to use to relate height to crown depth for adults - 0 = standard, 1 = Chapman-Richards, 2 = non-spatial density dependent.

◆ mp_iWhatAdultCRDFunction

ModelVector sortie.data.funcgroups.Allometry.mp_iWhatAdultCRDFunction

protected

Initial value:

= new ModelVector(
      "Adult Crown Radius-Diameter Function",
      "tr_whatAdultCrownRadDiam", "tr_wacrdVal", 0, ModelVector.MODEL_ENUM, true)

Which relationship to use to relate DBH to crown radius for adults - 0 = standard, 1 = Chapman-Richards, 2 = non-spatial density dependent.

◆ mp_iWhatAdultHDFunction

ModelVector sortie.data.funcgroups.Allometry.mp_iWhatAdultHDFunction

protected

Initial value:

= new ModelVector(
      "Adult Height-Diameter Function",
      "tr_whatAdultHeightDiam", "tr_wahdVal", 0, ModelVector.MODEL_ENUM, true)

Which relationship to use to relate height to DBH for adults - 0 = standard, 1 = linear, 2 = reverse linear.

◆ mp_iWhatSaplingCDHFunction

ModelVector sortie.data.funcgroups.Allometry.mp_iWhatSaplingCDHFunction

protected

Initial value:

= new ModelVector(
      "Sapling Crown Depth-Height Function",
      "tr_whatSaplingCrownHeightHeight", "tr_wschhVal", 0,
      ModelVector.MODEL_ENUM, true)

Which relationship to use to relate height to crown depth for saplings - 0 = standard, 1 = Chapman-Richards.

◆ mp_iWhatSaplingCRDFunction

ModelVector sortie.data.funcgroups.Allometry.mp_iWhatSaplingCRDFunction

protected

Initial value:

= new ModelVector(
      "Sapling Crown Radius-Diameter Function",
      "tr_whatSaplingCrownRadDiam", "tr_wscrdVal", 0, ModelVector.MODEL_ENUM, true)

Which relationship to use to relate DBH to crown radius for saplings - 0 = standard, 1 = Chapman-Richards.

◆ mp_iWhatSaplingHDFunction

ModelVector sortie.data.funcgroups.Allometry.mp_iWhatSaplingHDFunction

protected

Initial value:

= new ModelVector(
      "Sapling Height-Diameter Function",
      "tr_whatSaplingHeightDiam", "tr_wsahdVal", 0, ModelVector.MODEL_ENUM, true)

Which relationship to use to relate height to DBH for saplings - 0 = standard, 1 = linear, 2 = reverse linear.

◆ mp_iWhatSeedlingHDFunction

ModelVector sortie.data.funcgroups.Allometry.mp_iWhatSeedlingHDFunction

protected

Initial value:

= new ModelVector(
      "Seedling Height-Diameter Function",
      "tr_whatSeedlingHeightDiam", "tr_wsehdVal", 0, ModelVector.MODEL_ENUM, true)

Which relationship to use to relate height to diam10 for seedlings - 0 = standard, 1 = linear, 2 = reverse linear.

The documentation for this class was generated from the following file:

Allometry.java

Public Member Functions

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Allometry()

Member Function Documentation

◆ callSetupDialog()

◆ changeOfSpecies()

◆ changeOfSpeciesName()

◆ copySpecies()

◆ doSetup()

◆ formatDataForDisplay()

◆ getWhatAdultCDHFunction()

◆ getWhatAdultCRDFunction()

◆ getWhatAdultHDFunction()

◆ getWhatSaplingCDHFunction()

◆ getWhatSaplingCRDFunction()

◆ getWhatSaplingHDFunction()

◆ getWhatSeedlingHDFunction()

◆ setWhatAdultCDHFunction()

◆ setWhatAdultCRDFunction()

◆ setWhatAdultHDFunction()

◆ setWhatSaplingCDHFunction()

◆ setWhatSaplingCRDFunction()

◆ setWhatSaplingHDFunction()

◆ setWhatSeedlingHDFunction()

◆ validateData()

◆ writeParametersToTextFile()

Member Data Documentation

◆ mp_fAdultLinearIntercept

◆ mp_fAdultLinearSlope

◆ mp_fAdultReverseLinearIntercept

◆ mp_fAdultReverseLinearSlope

◆ mp_fCRAsympCrownHt

◆ mp_fCRAsympCrownRad

◆ mp_fCRCrownHtIntercept

◆ mp_fCRCrownHtShape1

◆ mp_fCRCrownHtShape2

◆ mp_fCRCrownRadIntercept

◆ mp_fCRCrownRadShape1

◆ mp_fCRCrownRadShape2

◆ mp_fCrownDepthExp

◆ mp_fCrownRadExp

◆ mp_fDiam10ToDbhIntercept

◆ mp_fDiam10ToDbhSlope

◆ mp_fMaxCanopyHeight

◆ mp_fMaxCrownRad

◆ mp_fNCICDAlpha

◆ mp_fNCICDBeta

◆ mp_fNCICDD

◆ mp_fNCICDGamma

◆ mp_fNCICDMaxCrowdingRadius

◆ mp_fNCICDMinNeighborDBH

◆ mp_fNCICDN

◆ mp_fNCICRAlpha

◆ mp_fNCICRBeta

◆ mp_fNCICRD

◆ mp_fNCICRGamma

◆ mp_fNCICRMaxCrowdingRadius

◆ mp_fNCICRMinNeighborDBH

◆ mp_fNCICRN

◆ mp_fNCIMaxCrownDepth

◆ mp_fNCIMaxCrownRadius

◆ mp_fNonSpatDensDepInstCDA

◆ mp_fNonSpatDensDepInstCDB

◆ mp_fNonSpatDensDepInstCDC

◆ mp_fNonSpatDensDepInstCDD

◆ mp_fNonSpatDensDepInstCDE

◆ mp_fNonSpatDensDepInstCDF

◆ mp_fNonSpatDensDepInstCDG

◆ mp_fNonSpatDensDepInstCDH

◆ mp_fNonSpatDensDepInstCDI

◆ mp_fNonSpatDensDepInstCDJ

◆ mp_fNonSpatDensDepInstCRA

◆ mp_fNonSpatDensDepInstCRB

◆ mp_fNonSpatDensDepInstCRC

◆ mp_fNonSpatDensDepInstCRD

◆ mp_fNonSpatDensDepInstCRE