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| NonSpatialDisperse (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString) |
| Constructor.
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void | validateData (TreePopulation oPop) throws ModelException |
| Validates the data before writing to a parameter file.
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| DisperseBase (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpFileString) |
| Constructor.
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GUIManager | getGUIManager () |
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| Behavior (GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpFileString) |
| Constructor.
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void | callSetupDialog (JDialog jParent, MainWindow oMain) |
| Override this to call a specific setup dialog for this behavior.
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int | getNumberOfDataObjects () |
| Gets the number of managed data objects.
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ModelData | getDataObject (int iInd) |
| Gets the managed data object at a particular index.
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void | validate () throws ModelException |
| Behavior performs an internal check to make sure its settings are consistent and logical.
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void | setListPosition (int iListPosition) throws ModelException |
| Sets the behavior list position.
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int | getListPosition () |
| Gets the behavior list position.
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String | getXMLParametersRoot () |
| Gets the XML parameter root string.
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int | getNumberNewDataMembers () |
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DataMember | getNewTreeDataMember (int iIndex) throws ModelException |
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void | setCanApplyTo (int iType, boolean bCanApply) |
| Sets whether this behavior can apply to a given tree type.
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String | getParameterFileBehaviorName () |
| Gets the parameter file name for this behavior.
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double | getVersion () |
| Gets behavior's parameter file version.
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double | getMinimumVersion () |
| Gets behavior's parameter file minimum version.
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String | getDescriptor () |
| Gets the descriptor string.
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String | getHelpFileString () |
| Gets the help file UD.
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void | setDescriptor (String s) |
| Sets the descriptor string.
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int | getNumberOfCombos () |
| Gets the number of species/type combos to which this behavior applies.
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int | getNumberOfGrids () |
| Gets the number of grids to which this behavior applies.
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void | deleteSpeciesTypeCombo (int iIndex) throws ModelException |
| Deletes the SpeciesTypeCombo at the given index.
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void | deleteSpeciesTypeCombo (SpeciesTypeCombo oCombo) throws ModelException |
| Deletes a SpeciesTypeCombo.
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void | clearSpeciesTypeCombos () |
| Empties the species/type combo list.
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SpeciesTypeCombo | getSpeciesTypeCombo (int iIndex) throws ModelException |
| Returns the SpeciesTypeCombo at the given index of the species/type combo list.
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Grid | getGrid (int iIndex) throws ModelException |
| Returns the Grid at the given index of the grid applies to list.
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ModelData | getRequiredData (int iIndex) |
| Returns the required data object at a given index.
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int | getNumberOfRequiredDataObjects () |
| Gets the number of required data objects for this behavior.
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void | addSpeciesTypeCombo (SpeciesTypeCombo oCombo) throws ModelException |
| Adds a new species/type combo to the list to which this behavior applies.
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void | addGrid (Grid oGrid, boolean bReplace) |
| Adds a new Grid to the list to which this behavior applies.
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void | addRequiredData (ModelData oData) |
| Adds a piece of required data to the list.
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boolean[] | getWhichSpeciesUsed (TreePopulation oPop) |
| Returns which species to which this behavior is applied.
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boolean | setVectorValueByXMLTag (String sXMLTag, String sXMLParentTag, ArrayList< String > p_oData, String[] p_sChildXMLTags, boolean[] p_bAppliesTo, Attributes oParentAttributes, Attributes[] p_oAttributes) throws ModelException |
| Sets a data vector's value.
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boolean | setSingleValueByXMLTag (String sXMLTag, String sXMLParentTag, Attributes oAttributes, Object oData) throws ModelException |
| Sets a data object's value.
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ModelData | findObjectByXMLTag (String sXMLTag) |
| Finds an object based on its XML tag.
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void | copySpecies (int iSpeciesCopyFrom, int iSpeciesCopyTo) throws ModelException |
| Copies one species to another.
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void | writeXML (BufferedWriter jOut, TreePopulation oPop) throws ModelException |
| Writes the XML data to a parameter file for the behaviors owned by this object.
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void | writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop) throws java.io.IOException, ModelException |
| Writes a set of species-specific float values to a parameter file.
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void | writeSpeciesSpecificValue (BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop, boolean[] p_bFlags) throws java.io.IOException, ModelException |
| Writes a set of species-specific values to a parameter file for a certain subset of species.
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void | readXMLParentTag (String sXMLTag, Attributes oAttributes) throws ModelException |
| Accepts an XML parent tag (empty, no data) from the parser.
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void | changeOfSpeciesName (String sOldSpecies, String sNewSpecies) |
| Performs any necessary tasks associated with changing the name of a species.
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void | changeOfSpecies (int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) throws ModelException |
| Triggered when there is a change in the species list.
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boolean | getMustHaveTrees () |
| Gets whether this behavior must have trees.
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ModelData | findObjectByDescriptor (String sDescriptor) |
| Finds an object based on its descriptor.
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void | writeBehaviorNode (BufferedWriter out, TreePopulation oPop) throws ModelException |
| Writes behavior tags to the parameter file.
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ArrayList
< BehaviorParameterDisplay > | formatDataForDisplay (TreePopulation oPop) |
| Formats data for display in a set of JTables.
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String | getAppliedToForDisplay (TreePopulation oPop) |
| Get which species/types this behavior applies to, in a display-friendly format truncated to 250 chars.
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void | readDataFromDisplay (ArrayList< BehaviorParameterDisplay > oData, TreePopulation oPop) throws ModelException |
| Reads in data from the parameter display window.
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boolean | canBeDuplicated () |
| Whether or not this behavior can be duplicated in the run.
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void | endOfParameterFileRead () |
| Called at the end of the parameter file read process.
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void | changeOfPlotResolution (float fOldX, float fOldY, float fNewX, float fNewY) throws ModelException |
| Performs any tasks associated with a change of plot resolution.
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setupType | getSetupType () |
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void | writeParametersToTextFile (FileWriter jOut, TreePopulation oPop) throws IOException |
| Writes the parameters for the behavior to file, using the same system as the basic parameter display and entry system.
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Corresponds to the clNonSpatialDispersal class.
- Author
- lora