SORTIE Java Interface  1
Class Index
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  A  
DimensionAnalysis (sortie.data.funcgroups.analysis)   Legend (sortie.datavisualizer)   OutputBehaviors (sortie.tools.parfileupdater)   SnagDecayClassDynamics (sortie.data.funcgroups.snagdynamics)   
DisperseBase (sortie.data.funcgroups.disperse)   LightBehaviors (sortie.data.funcgroups)   OutputBehaviors (sortie.data.funcgroups)   SnagDynamicsBehaviors (sortie.data.funcgroups)   
AbsoluteGrowthBALimited (sortie.data.funcgroups.growth)   DisperseBehaviors (sortie.tools.parfileupdater)   LightBehaviors (sortie.tools.parfileupdater)   OutputFileFilter (sortie.gui.components)   SnagDynamicsBehaviors (sortie.tools.parfileupdater)   
AbsoluteGrowthRadialLimited (sortie.data.funcgroups.growth)   DisperseBehaviors (sortie.data.funcgroups)   LightDependentSeedSurvival (sortie.data.funcgroups.establishment)   OutputSetup (sortie.gui)   SORTIEComboBox< T > (sortie.gui.components)   
AbsoluteUnlimited (sortie.data.funcgroups.growth)   ModelFlowSetup.DisplayBehaviorComboEdit (sortie.gui)   LightFilter (sortie.data.funcgroups.light)   OverviewTableDataRequest (sortie.datavisualizer)   SortieFont (sortie.gui.components)   
AggregatedMortality (sortie.data.funcgroups.mortality)   DisplayBehaviorComboEdit (sortie.gui)   LinearBiLevel (sortie.data.funcgroups.growth)   
  P  
SortieLabel (sortie.gui.components)   
AllometricDiam (sortie.data.funcgroups.growth)   ModelFlowSetup.DisplayBehaviorEdit (sortie.gui)   LineGraphDataRequest (sortie.datavisualizer)   SortieMenuItem (sortie.gui.components)   
AllometricHeight (sortie.data.funcgroups.growth)   ModelFlowSetup.DisplayComboEdit (sortie.gui)   LogBiLevel (sortie.data.funcgroups.growth)   PackageGridValue (sortie.data.funcgroups)   SpatialDisperseBase (sortie.data.funcgroups.disperse)   
Allometry (sortie.data.funcgroups)   DisplayWindowBase (sortie.gui.harvepplant)   Logistic (sortie.data.funcgroups.growth)   ParameterEdit (sortie.gui.behaviorsetup)   SpeciesSpecific (sortie.data.funcgroups)   
AllometryFunctionEditor (sortie.gui.behaviorsetup)   DisturbanceBehaviors (sortie.data.funcgroups)   LogisticBiLevelMortality (sortie.data.funcgroups.mortality)   ParameterFileParser (sortie.sax)   SpeciesTypeCombo (sortie.data.simpletypes)   
AllometryParameterEdit (sortie.gui.behaviorsetup)   DisturbanceBehaviors (sortie.tools.parfileupdater)   LogisticHeightOnly (sortie.data.funcgroups.growth)   ParFileHelpers (sortie.parfile)   StandTableDataRequest (sortie.datavisualizer)   
AnalysisBehaviors (sortie.tools.parfileupdater)   DoubleMMRel (sortie.data.funcgroups.growth)   Lognormal (sortie.data.funcgroups.growth)   PartitionedBiomassLineGraphDataRequest (sortie.datavisualizer)   StateChangeBehaviors (sortie.tools.parfileupdater)   
AnalysisBehaviors (sortie.data.funcgroups)   
  E  
LognormalHeightOnly (sortie.data.funcgroups.growth)   PartitionedBiomassTableDataRequest (sortie.datavisualizer)   StateChangeBehaviors (sortie.data.funcgroups)   
AverageLight (sortie.data.funcgroups.light)   
  M  
PartitionedDBHBiomass (sortie.data.funcgroups.analysis)   StateReporter (sortie.data.funcgroups.analysis)   
  B  
EditWindowBase (sortie.gui.harvepplant)   PartitionedHeightBiomass (sortie.data.funcgroups.analysis)   StateVariableTableDataRequest (sortie.datavisualizer)   
NCIEffect.effectType (sortie.data.funcgroups.nci)   MainWindow (sortie.gui)   PlantEdit (sortie.gui.harvepplant)   StochasticBiLevelLightMortality (sortie.data.funcgroups.mortality)   
BasalAreaLight (sortie.data.funcgroups.light)   EnhancedTable (sortie.gui.behaviorsetup)   MainWindowStateSetter (sortie.gui)   Planting (sortie.data.funcgroups.planting)   StochasticGap (sortie.data.funcgroups.growth)   
BatchDetailedOutput (sortie.tools.batchoutput)   EnhancedTableWindow (sortie.gui.behaviorsetup)   ManagementBehaviors (sortie.data.funcgroups)   PlantingBehaviors (sortie.data.funcgroups)   StochasticMort (sortie.data.funcgroups.mortality)   
BatchOptionsDialog (sortie.tools.batchoutput)   EpiphyticEstablishment (sortie.data.funcgroups.epiphyticestablishment)   ManagementBehaviors (sortie.tools.parfileupdater)   PlantingBehaviors (sortie.tools.parfileupdater)   StochDoubleLogTempDepNeighDisperse (sortie.data.funcgroups.disperse)   
BatchSetup (sortie.gui)   EpiphyticEstablishmentBehaviors (sortie.tools.parfileupdater)   ManageTreeMap (sortie.gui)   PlantingData (sortie.data.funcgroups.planting)   StockTableDataRequest (sortie.datavisualizer)   
BCMort (sortie.data.funcgroups.mortality)   EpiphyticEstablishmentBehaviors (sortie.data.funcgroups)   MastingNonSpatialDisperse (sortie.data.funcgroups.disperse)   PlantingDisplayWindow (sortie.gui.harvepplant)   Storm (sortie.data.funcgroups.disturbance)   
Behavior (sortie.tools.parfileupdater)   EpisodicEventsMouseListener (sortie.gui.harvepplant)   MastingSpatialDisperse (sortie.data.funcgroups.disperse)   Plot (sortie.data.funcgroups)   StormDamageApplier (sortie.data.funcgroups.disturbance)   
Behavior (sortie.data.funcgroups)   EpisodicMortality (sortie.data.funcgroups.disturbance)   MerchValueCalculator (sortie.data.funcgroups.analysis)   PlotBehaviors (sortie.data.funcgroups)   StormDamageKiller (sortie.data.funcgroups.disturbance)   
BehaviorInstantiator (sortie.data.funcgroups)   ErrorGUI (sortie.gui)   MerchValueDataRequest (sortie.datavisualizer)   PopupListener (sortie.tools.batchoutput)   StormDataRequest (sortie.datavisualizer)   
ModelFlowSetup.BehaviorPackager (sortie.gui)   Establishment (sortie.data.funcgroups.establishment)   MichMenNeg (sortie.data.funcgroups.growth)   PostHarvestSkiddingMort (sortie.data.funcgroups.mortality)   StormDirectKiller (sortie.data.funcgroups.disturbance)   
BehaviorParameterDisplay (sortie.gui.behaviorsetup)   EstablishmentBehaviors (sortie.data.funcgroups)   MichMenPhotoinhibition (sortie.data.funcgroups.growth)   PowerHeight (sortie.data.funcgroups.growth)   StormKilledPartitionedBiomassDataRequest (sortie.datavisualizer)   
BehaviorTypeBase (sortie.data.funcgroups)   EstablishmentBehaviors (sortie.tools.parfileupdater)   MicroEstablishment (sortie.data.funcgroups.establishment)   NCIEffect.precipitation_effect (sortie.data.funcgroups.nci)   StormKilledPartitionedDBHBiomass (sortie.data.funcgroups.analysis)   
BoleVolumeCalculator (sortie.data.funcgroups.analysis)   ExpResourceMortality (sortie.data.funcgroups.mortality)   MicrotopographicSubstrateSeedSurvival (sortie.data.funcgroups.establishment)   PrecipitationClimateChange (sortie.data.funcgroups.statechange)   StormKilledPartitionedHeightBiomass (sortie.data.funcgroups.analysis)   
BrowsedRelativeGrowth (sortie.data.funcgroups.growth)   
  F  
Model (sortie.parfile)   PrecipitationEffectDoubleLogistic (sortie.data.funcgroups.nci)   StormLight (sortie.data.funcgroups.light)   
BrowsedStochasticMortality (sortie.data.funcgroups.mortality)   ModelData (sortie.data.simpletypes)   PrecipitationEffectWeibull (sortie.data.funcgroups.nci)   StormLightDependentSeedSurvival (sortie.data.funcgroups.establishment)   
  C  
FileAnalysisBackgroundProcess (sortie.tools.batchoutput)   ModelData (sortie.tools.parfileupdater)   ProgressChangeListener (sortie.tools.batchoutput)   StormParameterEdit (sortie.gui.behaviorsetup)   
FileChoosingWindow (sortie.tools.batchoutput)   ModelEnum (sortie.data.simpletypes)   ProgressDialog (sortie.tools.batchoutput)   Subplot (sortie.data.funcgroups)   
CarbonValueCalculator (sortie.data.funcgroups.analysis)   HarvestInterfaceSetup.FileColumnsChooser (sortie.gui.behaviorsetup)   ModelException (sortie.data.simpletypes)   ProportionalSeedSurvival (sortie.data.funcgroups.establishment)   SubplotEdit (sortie.gui)   
CarbonValueDataRequest (sortie.datavisualizer)   FileOpenFilter (sortie.gui.components)   ModelFileChooser (sortie.gui.components)   PRSemiStochDiamOnly (sortie.data.funcgroups.growth)   Substrate (sortie.data.funcgroups.substrate)   
Cell (sortie.data.simpletypes)   FileWritingBackgroundProcess (sortie.tools.batchoutput)   ModelFileFunctions (sortie.fileops)   PRStormBiLevel (sortie.data.funcgroups.growth)   SubstrateBehaviors (sortie.data.funcgroups)   
XYCellRenderer.CellTooltipGenerator (sortie.datavisualizer)   FoliarChemistry (sortie.data.funcgroups.analysis)   ModelFloat (sortie.data.simpletypes)   
  Q  
SubstrateBehaviors (sortie.tools.parfileupdater)   
ChartFrameInfo (sortie.gui)   FoliarChemistryLineGraphDataRequest (sortie.datavisualizer)   ModelFlowSetup (sortie.gui)   SubstrateDepEstablishmentBase (sortie.data.funcgroups.establishment)   
ChartInfo (sortie.tools.batchoutput)   FoliarChemistryTableDataRequest (sortie.datavisualizer)   ModelHistogramDataset (sortie.datavisualizer)   QuadratGLILight (sortie.data.funcgroups.light)   SuppressionDurationMort (sortie.data.funcgroups.mortality)   
ClimateCompDepNeighborhoodSurvival (sortie.data.funcgroups.mortality)   FuncResponseSeedPredation (sortie.data.funcgroups.seedpredation)   ModelIcon (sortie.gui.components)   QualityVigorClassifier (sortie.data.funcgroups.management)   SwingWorker (sortie.parfile)   
ComboDisplay (sortie.data.simpletypes)   FuncResponseSeedPredationLnk (sortie.data.funcgroups.seedpredation)   ModelInt (sortie.data.simpletypes)   QuickScrollingPanel (sortie.gui.behaviorsetup)   
  T  
CompetitionHarvest (sortie.data.funcgroups.disturbance)   
  G  
ModelInternalFrame (sortie.datavisualizer)   
  R  
CompetitionMortality (sortie.data.funcgroups.mortality)   ModelMessage (sortie.data.simpletypes)   TableData (sortie.gui.behaviorsetup)   
ConditOmegaCalculator (sortie.data.funcgroups.analysis)   GapLight (sortie.data.funcgroups.light)   ModelString (sortie.data.simpletypes)   RandomBrowse (sortie.data.funcgroups.disturbance)   TarArchive (sortie.fileops)   
ConspecificTreeDensitySeedSurvival (sortie.data.funcgroups.establishment)   GapSpatialDisperse (sortie.data.funcgroups.disperse)   ModelVector (sortie.data.simpletypes)   RelativeGrowthBALimited (sortie.data.funcgroups.growth)   Tarball (sortie.fileops)   
ConstantBA (sortie.data.funcgroups.growth)   GapSubstrateSeedSurvival (sortie.data.funcgroups.establishment)   MortalityBehaviors (sortie.tools.parfileupdater)   RelativeGrowthRadialLimited (sortie.data.funcgroups.growth)   TempDepNeighborhoodSurvival (sortie.data.funcgroups.mortality)   
ConstantGLI (sortie.data.funcgroups.light)   GeneralizedHarvestRegime (sortie.data.funcgroups.disturbance)   MortalityBehaviors (sortie.data.funcgroups)   RelativeHeight (sortie.data.funcgroups.growth)   NCIEffect.temperature_effect (sortie.data.funcgroups.nci)   
ConstantRadial (sortie.data.funcgroups.growth)   GLIBase (sortie.data.funcgroups.light)   MortalityEpisodeDisplayWindow (sortie.gui.harvepplant)   RelativeNeighborhoodDensityDataRequest (sortie.datavisualizer)   TemperatureClimateChange (sortie.data.funcgroups.statechange)   
TreeSpeciesSetup.CopySpeciesEditor (sortie.gui)   GLILight (sortie.data.funcgroups.light)   MortalityEpisodeEdit (sortie.gui.harvepplant)   RelativeUnlimited (sortie.data.funcgroups.growth)   TemperatureDependentNeighborhoodDisperse (sortie.data.funcgroups.disperse)   
NCIEffect.crowding_effect (sortie.data.funcgroups.nci)   GLIMap (sortie.data.funcgroups.light)   MortalityUtilitiesBehaviors (sortie.data.funcgroups)   RipleysKCalculator (sortie.data.funcgroups.analysis)   TemperatureEffectDoubleLogistic (sortie.data.funcgroups.nci)   
CrowdingEffectDefault (sortie.data.funcgroups.nci)   GLIPoints (sortie.data.funcgroups.light)   MortalityUtilitiesBehaviors (sortie.tools.parfileupdater)   RipleysKDataRequest (sortie.datavisualizer)   TemperatureEffectWeibull (sortie.data.funcgroups.nci)   
CrowdingEffectNoSize (sortie.data.funcgroups.nci)   GMFMort (sortie.data.funcgroups.mortality)   MultilineLabel (sortie.gui.components)   
  S  
TextFileFilter (sortie.gui.components)   
CrowdingEffectTempDep (sortie.data.funcgroups.nci)   Grid (sortie.data.funcgroups)   
  N  
SwingWorker.ThreadVar (sortie.parfile)   
  D  
GridAllSpeciesHistogramDataRequest (sortie.datavisualizer)   SailLight (sortie.data.funcgroups.light)   Tree (sortie.data.funcgroups)   
GridCellEditor (sortie.gui)   NCIEffect.nci_term (sortie.data.funcgroups.nci)   SaxParseTools (sortie.sax)   TreeAgeCalculator (sortie.data.funcgroups.analysis)   
NCIEffect.damage_effect (sortie.data.funcgroups.nci)   GridDataRequest (sortie.datavisualizer)   NCIEffect (sortie.data.funcgroups.nci)   ScheduledStormInfo (sortie.gui)   TreeBehavior (sortie.data.funcgroups)   
DamageEffectDefault (sortie.data.funcgroups.nci)   GridHistogramDataRequest (sortie.datavisualizer)   NCIEffectsEditor (sortie.gui.behaviorsetup)   ScheduledStormSetup (sortie.gui)   TreeListWriter (sortie.datavisualizer)   
DataFileManager (sortie.datavisualizer)   GridSetup (sortie.gui)   NCILargerNeighbors (sortie.data.funcgroups.nci)   SeasonalWaterDeficit (sortie.data.funcgroups.statechange)   TreeMapCrownRadDataRequest (sortie.datavisualizer)   
DataGrapher (sortie.datavisualizer)   GridValue (sortie.data.funcgroups)   NCIMasterBase (sortie.data.funcgroups.nci)   SeedPredationBehaviors (sortie.tools.parfileupdater)   TreeMapDataRequest (sortie.datavisualizer)   
DataMember (sortie.data.simpletypes)   GridValueEditor (sortie.gui)   NCIMasterGrowth (sortie.data.funcgroups.nci)   SeedPredationBehaviors (sortie.data.funcgroups)   TreeOutputSaveInfo (sortie.data.funcgroups)   
DataMemberData (sortie.data.simpletypes)   GroupBase (sortie.tools.parfileupdater)   NCIMasterMortality (sortie.data.funcgroups.nci)   SeedTableDataRequest (sortie.datavisualizer)   TreePopulation (sortie.data.funcgroups)   
DataRequest (sortie.datavisualizer)   GrowthBehaviors (sortie.data.funcgroups)   NCIMasterQuadratGrowth (sortie.data.funcgroups.nci)   SelectionHarvest (sortie.data.funcgroups.disturbance)   TreeSpeciesSetup (sortie.gui)   
DataVisualizerManager (sortie.datavisualizer)   GrowthBehaviors (sortie.tools.parfileupdater)   NCINeighborBA (sortie.data.funcgroups.nci)   SelfThinMort (sortie.data.funcgroups.mortality)   XYTreeRenderer.TreeTooltipGenerator (sortie.datavisualizer)   
DeadTreeRemover (sortie.data.funcgroups.mortalityutilities)   GrowthResourceMortality (sortie.data.funcgroups.mortality)   NCIParameterEdit (sortie.gui.behaviorsetup)   SenescenceMort (sortie.data.funcgroups.mortality)   
  V  
DefaultBehaviorParameterEdit (sortie.gui.behaviorsetup)   GUIManager (sortie.gui)   NCITermBARatio (sortie.data.funcgroups.nci)   Behavior.setupType (sortie.data.funcgroups)   
DensDepInfestation (sortie.data.funcgroups.disturbance)   
  H  
NCITermBARatioDBHDefault (sortie.data.funcgroups.nci)   ShadedLinearGrowth (sortie.data.funcgroups.growth)   ValidationHelpers (sortie.data.funcgroups)   
DensityDependentSeedSurvival (sortie.data.funcgroups.establishment)   NCITermDefault (sortie.data.funcgroups.nci)   ShadedLinearGrowthHeightOnly (sortie.data.funcgroups.growth)   VolumeCalculator (sortie.data.funcgroups.analysis)   
DensitySelfThinning (sortie.data.funcgroups.mortality)   Harvest (sortie.data.funcgroups.disturbance)   NCITermNCIBARatio (sortie.data.funcgroups.nci)   NCIEffect.shading_effect (sortie.data.funcgroups.nci)   
  W  
DensitySelfThinningGompertz (sortie.data.funcgroups.mortality)   HarvestData (sortie.data.funcgroups.disturbance)   NCITermNCIBARatioDBHDefault (sortie.data.funcgroups.nci)   ShadingDefault (sortie.data.funcgroups.nci)   
DesktopListener (sortie.datavisualizer)   HarvestDataRequest (sortie.datavisualizer)   NCITermNCITempDepBARatio (sortie.data.funcgroups.nci)   ShortOutput (sortie.data.funcgroups.output)   WeibullSnagMort (sortie.data.funcgroups.mortality)   
DetailedGridSettings (sortie.data.simpletypes)   HarvestDisplayWindow (sortie.gui.harvepplant)   NCITermNCITempDepBARatioDBHDefault (sortie.data.funcgroups.nci)   ShortOutputFileManager (sortie.datavisualizer)   DisplayWindowBase.windowType (sortie.gui.harvepplant)   
DetailedOutput (sortie.data.funcgroups.output)   HarvestEdit (sortie.gui.harvepplant)   NCITermWithNeighborDamage (sortie.data.funcgroups.nci)   ShortOutputFileSetup (sortie.gui)   Windstorm (sortie.data.funcgroups.disturbance)   
DetailedOutputDeadTreeSetup (sortie.gui)   HarvestInterface (sortie.data.funcgroups.disturbance)   NCIWithSeedlings (sortie.data.funcgroups.nci)   SimpleLinear (sortie.data.funcgroups.growth)   WindstormDataRequest (sortie.datavisualizer)   
DetailedOutputFileCopy (sortie.gui)   HarvestInterfaceSetup (sortie.gui.behaviorsetup)   NeighborhoodSeedPredation (sortie.data.funcgroups.seedpredation)   SimpleLinearHeightOnly (sortie.data.funcgroups.growth)   
  X  
DetailedOutputFileFilter (sortie.gui)   HeightGLIWeibullMortality (sortie.data.funcgroups.mortality)   NeighborhoodSeedPredationLnk (sortie.data.funcgroups.seedpredation)   NCIEffect.size_effect (sortie.data.funcgroups.nci)   
DetailedOutputFileManager (sortie.datavisualizer)   HistogramBin (sortie.datavisualizer)   NCIEffect.nitrogen_effect (sortie.data.funcgroups.nci)   SizeClassEditor (sortie.gui)   XMLFileFilter (sortie.gui.components)   
DetailedOutputFileSetup (sortie.gui)   HistogramDataRequest (sortie.datavisualizer)   NitrogenEffectGaussian (sortie.data.funcgroups.nci)   SizeDependentLogisticMortality (sortie.data.funcgroups.mortality)   XYCellRenderer (sortie.datavisualizer)   
DetailedOutputFileSetupParseHandler (sortie.datavisualizer)   
  I  
NoGapSubstrateSeedSurvival (sortie.data.funcgroups.establishment)   SizeDepLogistic (sortie.data.funcgroups.growth)   XYSimpleCellRenderer (sortie.datavisualizer)   
DetailedOutputGridSetup (sortie.gui)   NonGapSpatialDisperse (sortie.data.funcgroups.disperse)   SizeDepLogisticHeightOnly (sortie.data.funcgroups.growth)   XYTreeRenderer (sortie.datavisualizer)   
DetailedOutputLegend (sortie.datavisualizer)   NCIEffect.infection_effect (sortie.data.funcgroups.nci)   NonSpatialDisperse (sortie.data.funcgroups.disperse)   SizeEffectCompoundExpInf (sortie.data.funcgroups.nci)   XYZDataItem (sortie.datavisualizer)   
DetailedOutputSettings (sortie.data.simpletypes)   InfectionEffect (sortie.data.funcgroups.nci)   
  O  
SizeEffectCompoundExponential (sortie.data.funcgroups.nci)   XYZSimpleDataset (sortie.datavisualizer)   
DetailedOutputTimestepParseHandler (sortie.datavisualizer)   InfectionEffectSizeDependent (sortie.data.funcgroups.nci)   SizeEffectDefault (sortie.data.funcgroups.nci)   
DetailedOutputTreeSetup (sortie.gui)   InsectInfestation (sortie.data.funcgroups.disturbance)   OKCancelButtonPanel (sortie.gui.components)   SizeEffectLowerBounded (sortie.data.funcgroups.nci)   
DetailedSubstrate (sortie.data.funcgroups.substrate)   InsectInfestationMortality (sortie.data.funcgroups.mortality)   OldParFileParser (sortie.tools.parfileupdater)   SizeEffectPowerFunction (sortie.data.funcgroups.nci)   
DetailedTreeSettings (sortie.data.simpletypes)   Interface (sortie.parfile)   OptionChoosingWindow (sortie.tools.batchoutput)   SizeEffectShiftedLogInf (sortie.data.funcgroups.nci)   
Diam10Edit (sortie.gui.harvepplant)   
  L  
OutFileFilter (sortie.gui.components)   SizeEffectShiftedLognormal (sortie.data.funcgroups.nci)   
LaggedPostHarvestGrowth (sortie.data.funcgroups.growth)   
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