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| clNCIMasterQuadratGrowth (clSimManager *p_oSimManager) |
| Constructor.
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| ~clNCIMasterQuadratGrowth () |
| Destructor.
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float | CalcDiameterGrowthValue (clTree *p_oTree, clTreePopulation *p_oPop, float fHeightGrowth) |
| Returns the value in the tree's float data member that holds the value that was calculated by PreGrowthCalcs().
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void | PreGrowthCalcs (clTreePopulation *p_oPop) |
| Calculates growth for all NCI trees.
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void | DoShellSetup (xercesc::DOMDocument *p_oDoc) |
| Does setup.
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void | SetNameData (std::string sNameString) |
| Captures the namestring passed to this behavior.
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| clGrowthBase (clSimManager *p_oSimManager) |
| Constructor.
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virtual | ~clGrowthBase () |
| Destructor.
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void | Action () |
| Performs all growth calculations if "hooked".
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virtual float | CalcHeightGrowthValue (clTree *p_oTree, clTreePopulation *p_oPop, float fDiameterGrowth) |
| Calculates the amount of height growth increase for a particular tree, if applicable.
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virtual float | GetGrowthMemberValue (clTree *p_oTree, float fDiameterGrowth) |
| Calculates the value to go into a tree's "Growth" data member as the amount of growth.
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growthType | GetGrowthMethod () |
| Gets the method by which this behavior increments growth.
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clGrowthOrg * | GetGrowthOrg () |
| Get the growth org object.
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void | RegisterTreeDataMembers () |
| Performs data member registrations for "Growth".
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virtual float | GetBehaviorVersion () |
| Gets the behavior version number.
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| clBehaviorBase (clSimManager *p_oSimManager) |
| Constructor.
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virtual | ~clBehaviorBase () |
| Destructor.
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virtual short int | ValidateVersionNumber (float fTestVersion) |
| Makes sure that the version number of a file passed is between the minimum and current version numbers.
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virtual void | SetSpeciesTypeCombos (short int iNumCombos, stcSpeciesTypeCombo *p_whatCombos) |
| Sets the species/type combos for a behavior.
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virtual short int | GetNewTreeInts () |
| Gets the number of new tree integer data members this behavior wants to register.
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virtual short int | GetNewTreeFloats () |
| Gets the number of new tree float data members this behavior wants to register.
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virtual short int | GetNewTreeChars () |
| Gets the number of new tree character data members this behavior wants to register.
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virtual short int | GetNewTreeBools () |
| Gets the number of new tree bool data members this behavior wants to register.
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virtual short int | GetNumSpeciesTypeCombos () |
| Gets the number of species/type combos to which this behavior applies.
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virtual short int | GetNumBehaviorSpecies () |
| Gets the number of unique tree species to which this behavior applies.
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struct stcSpeciesTypeCombo | GetSpeciesTypeCombo (short int iIndex) |
| Gets one of this behavior's type/species combos.
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virtual short int | GetBehaviorSpecies (short int iIndex) |
| Gets one of the behavior's species.
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short int | GetBehaviorListNumber () |
| Gets the behavior list number for this behavior, which differentiates between multiple copies of the behavior in the behavior list.
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void | SetBehaviorListNumber (short int iNumber) |
| Sets the behavior list number for this behavior, which differentiates between multiple copies of the behavior in the behavior list.
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std::string | FormatSpeciesTypeQueryString () |
| Formats the string for species/types query.
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virtual DOMElement * | GetParentParametersElement (xercesc::DOMDocument *p_oDoc) |
| This will get the correct set of parameters for this behavior based on the behavior list position number.
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| clWorkerBase (clSimManager *p_oSimManager) |
| Constructor.
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virtual | ~clWorkerBase () |
| Destructor.
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std::string | GetName () |
| Gets the object's namestring.
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clSimManager * | GetSimManager () |
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void | DoObjectSetup (xercesc::DOMDocument *p_oDoc, fileType iFileType) |
| Triggers the setup process.
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virtual void | TimestepCleanup () |
| Performs any necessary cleanup operations at the end of a timestep.
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virtual void | EndOfRunCleanup () |
| Performs any necessary cleanup operations at the end of a run.
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void | SetupGrid (clTreePopulation *p_oPop) |
| Sets up the "NCI Climate Quadrat Growth" grid.
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float | DeterministicAdjust (float fNumber, int iSpecies) |
| Performs a deterministic adjustment of growth.
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float | NormalAdjust (float fNumber, int iSpecies) |
| Performs a stochastic adjustment of growth according to a normal distribution.
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float | LognormalAdjust (float fNumber, int iSpecies) |
| Performs a stochastic adjustment of growth according to a lognormal distribution.
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void | SetFunctionPointer () |
| Sets the Adjust function pointer according to the value of m_iStochasticGrowthMethod.
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void | GetData (xercesc::DOMDocument *p_oDoc) |
| Triggers all growth setup if an object is hooked.
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clGrid * | mp_oGrid |
| Grid holding amount of growth for each species.
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float * | mp_fMaxPotentialValue |
| Maximum growth value.
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float * | mp_fRandParameter |
| Standard deviation if normal or lognormal distribution is desired.
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short int * | mp_iGridGrowthCodes |
| Holds data member codes for the "growth_x" data members of the "NCI
Climate Quadrat Growth" grid.
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short int | m_iNumTotalSpecies |
| Total number of species - for the destructor.
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pdf | m_iStochasticGrowthMethod |
| What stochastic growth distribution applies to this run.
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float(clNCIMasterQuadratGrowth::* | Adjust )(float fNumber, int iSpecies) |
| Function pointer for the appropriate Adjust function.
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growthType | m_iGrowthMethod |
| The method by which this object plans to update tree dimensions.
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float | m_fConvertCmPerTSToMmPerYr |
| Conversion factor from cm diameter growth per timestep to mm radial growth per year.
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float | m_fConvertMmPerYearToCmPerTS |
| Conversion factor to take amounts from mm of radial growth per year to cm of diameter growth per timestep.
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bool | m_bHooked |
| Wwhether or not this shell object is hooked to clGrowthOrg.
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bool | m_bGoLast |
| Whether or not this behavior's growth should go last when used with a complementary growth behavior.
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short int | m_iNumSpeciesTypeCombos |
| How many type/species combos a behavior will act on.
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short int | m_iNumBehaviorSpecies |
| How many distinct species are in the combo list - important for filling species-specific values from parameter file.
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short int * | mp_iWhatSpecies |
| List of distinct species - for filling species-specific values from parameter file.
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stcSpeciesTypeCombo * | mp_whatSpeciesTypeCombos |
| Array of species/type combos that the behavior will act on.
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short int | m_iNewTreeInts |
| The number of new tree integer data members this behavior wants to add.
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short int | m_iNewTreeFloats |
| The number of new tree float data members this behavior wants to add.
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short int | m_iNewTreeChars |
| The number of new tree character data members this behavior wants to add.
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short int | m_iNewTreeBools |
| The number of new tree boolean data members this behavior wants to add.
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short int | m_iBehaviorListNumber |
| The number of this behavior in the behavior list, to differentiate between possible multiple copies of this behavior.
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float | m_fVersionNumber |
| Version number - this will be rounded to 2 digits after the decimal place.
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std::string | m_sXMLRoot |
| XML root that encloses the parameters for this behavior.
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float | m_fMinimumVersionNumber |
| Minimum version number - this behavior will run parameter data for a file marked between this number and the current version number, inclusive.
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std::string | m_sNameString |
| If a behavior has registered a command line command with the sim manager, this allows it to be called.
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clSimManager * | mp_oSimManager |
| Pointer to the simulation manager object.
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int * | mp_iAllowedFileTypes |
| List of the input file types this object can handle.
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int | m_iNumAllowedTypes |
| Number of input file types this object can handle.
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NCI quadrat growth - Version 1.0.
This is a growth shell object which applies the NCI (neighborhood competition index) function. The basic function is a maximum rate of growth that is reduced by a set of multiplicative effects. The set of effects used is up to the user. This simplifies the process by calculating annual growth on a per quadrat basis.
The main difference between this and NCI growth is that this uses no size, shading, or damage effects.
The amount of growth is in cm/year. For multi-year timesteps, the behavior will calculate a single year's growth and then multiply by number of years per timestep.
The annual growth for each species is calculated for each grid cell in the "NCI Quadrat Growth" grid, which this behavior creates. Trees take their growth from the grid cell in which they are found. This value can be applied as-is or used as the basis for a random draw to introducing stochasticity.
The parameter file call string for this to be diameter-incrementing with auto-height updating is "NCIMasterQuadratGrowth"; for diameter-only incrementing, use "NCIMasterQuadratGrowth diam only". The namestring for this behavior is "nciquadratgrowthshell". The XML string is "NCIMasterQuadratGrowth".
Copyright 2013 Charles D. Canham.
- Author
- Lora E. Murphy
Edit history:
--------------—
January 7, 2013: Created (LEM)
Calculates growth for all NCI trees.
Climate effects, which do not depend on individual trees, are called once; effects which do not depend on a target tree's size are called once per tree; and effects with a size component are called once per year, looping over the years in a timestep. The values are stashed in the "Growth" tree float data member for later application.
This must be called first of any growth stuff, since it uses other trees' DBHs to calculate NCI, and these must be before growth has been applied.
Growth per timestep is calculated by looping over the number of years per timestep and incrementing the DBH.
- Parameters
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p_oPop | Tree population object. |
Reimplemented from clGrowthBase.