addDataObjectToDisplayArrays(ModelData p_oDataObject, ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
addDataToArray(Object[][] p_oExistingArray, Object[] p_oAddArray) | sortie.data.funcgroups.Behavior | static |
addGrid(Grid oGrid, boolean bReplace) | sortie.data.funcgroups.Behavior | |
addRequiredData(ModelData oData) | sortie.data.funcgroups.Behavior | |
addSpeciesTypeCombo(SpeciesTypeCombo oCombo) | sortie.data.funcgroups.nci.NCIMasterBase | |
Behavior(GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpFileString) | sortie.data.funcgroups.Behavior | |
boolArraysEqual(boolean[] p_bArrayOne, boolean[] p_bArrayTwo) | sortie.data.funcgroups.Behavior | protectedstatic |
callSetupDialog(JDialog jParent, MainWindow oMain) | sortie.data.funcgroups.nci.NCIMasterBase | |
canBeDuplicated() | sortie.data.funcgroups.Behavior | |
changeOfPlotResolution(float fOldX, float fOldY, float fNewX, float fNewY) | sortie.data.funcgroups.Behavior | |
changeOfSpecies(int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | |
changeOfSpeciesName(String sOldSpecies, String sNewSpecies) | sortie.data.funcgroups.nci.NCIMasterBase | |
clearSpeciesTypeCombos() | sortie.data.funcgroups.nci.NCIMasterBase | |
copySpecies(int iSpeciesCopyFrom, int iSpeciesCopyTo) | sortie.data.funcgroups.nci.NCIMasterBase | |
deleteSpeciesTypeCombo(int iIndex) | sortie.data.funcgroups.nci.NCIMasterBase | |
sortie::data::funcgroups::Behavior.deleteSpeciesTypeCombo(SpeciesTypeCombo oCombo) | sortie.data.funcgroups.Behavior | |
endOfParameterFileRead() | sortie.data.funcgroups.Behavior | |
ensureSize(ArrayList<?> list, int size) | sortie.data.funcgroups.Behavior | static |
findObjectByDescriptor(String sDescriptor) | sortie.data.funcgroups.Behavior | |
findObjectByXMLTag(String sXMLTag) | sortie.data.funcgroups.Behavior | |
formatBlankHeaderRow(Object[][] p_oTable) | sortie.data.funcgroups.Behavior | static |
formatComboBoxString(ModelEnum oToFormat) | sortie.data.funcgroups.Behavior | static |
formatDataAsComboBox(Object[][] p_oExisting, ModelEnum oToFormat) | sortie.data.funcgroups.Behavior | static |
formatDataForDisplay(TreePopulation oPop) | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | |
formatDataForTable(Object[][] p_oExisting, ModelFloat oToFormat) | sortie.data.funcgroups.Behavior | static |
formatDataForTable(Object[][] p_oExisting, ModelInt oToFormat) | sortie.data.funcgroups.Behavior | static |
formatDataForTable(Object[][] p_oExisting, ModelString oToFormat) | sortie.data.funcgroups.Behavior | static |
formatDataForTable(Object[][] p_oExisting, ModelVector oToFormat) | sortie.data.funcgroups.Behavior | static |
formatDataForTable(Object[][] p_oExisting, ModelVector oToFormat, boolean[] p_bWhichSpecies) | sortie.data.funcgroups.Behavior | static |
formatEffectsDataForDisplay(TreePopulation oPop) | sortie.data.funcgroups.nci.NCIMasterBase | |
formatSpeciesHeaderRow(boolean[] p_bUsed, TreePopulation oPop) | sortie.data.funcgroups.Behavior | static |
formatTable(ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, TreePopulation oPop) | sortie.data.funcgroups.Behavior | protected |
getAppliedToForDisplay(TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
getCrowdingEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getCrowdingEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getDamageEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getDamageEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getDataObject(int iInd) | sortie.data.funcgroups.Behavior | |
getDescriptor() | sortie.data.funcgroups.Behavior | |
getGrid(int iIndex) | sortie.data.funcgroups.Behavior | |
getGUIManager() | sortie.data.funcgroups.Behavior | |
getHelpFileString() | sortie.data.funcgroups.Behavior | |
getInfectionEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getInfectionEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getListPosition() | sortie.data.funcgroups.Behavior | |
getMinimumVersion() | sortie.data.funcgroups.Behavior | |
getMustHaveTrees() | sortie.data.funcgroups.Behavior | |
getNCITermChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getNCITermChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getNewTreeDataMember(int iIndex) | sortie.data.funcgroups.Behavior | |
getNitrogenEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getNitrogenEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getNumberNewDataMembers() | sortie.data.funcgroups.Behavior | |
getNumberOfCombos() | sortie.data.funcgroups.Behavior | |
getNumberOfDataObjects() | sortie.data.funcgroups.Behavior | |
getNumberOfGrids() | sortie.data.funcgroups.Behavior | |
getNumberOfRequiredDataObjects() | sortie.data.funcgroups.Behavior | |
getParameterFileBehaviorName() | sortie.data.funcgroups.Behavior | |
getPrecipitationEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getPrecipitationEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getRequiredData(int iIndex) | sortie.data.funcgroups.Behavior | |
getSetupType() | sortie.data.funcgroups.Behavior | |
getShadingEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getShadingEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getSizeEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getSizeEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getSpeciesTypeCombo(int iIndex) | sortie.data.funcgroups.Behavior | |
getTemperatureEffectChoice() | sortie.data.funcgroups.nci.NCIMasterBase | |
getTemperatureEffectChoices(boolean all) | sortie.data.funcgroups.nci.NCIMasterBase | |
getVersion() | sortie.data.funcgroups.Behavior | |
getWhichSpeciesUsed(TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
getXMLParametersRoot() | sortie.data.funcgroups.Behavior | |
gridSetup(String[] p_sSpeciesNames) | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | private |
m_bCanBeDuplicated | sortie.data.funcgroups.Behavior | protected |
m_bMustHaveTrees | sortie.data.funcgroups.Behavior | |
m_bUsesIndividuals | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_fMinVersion | sortie.data.funcgroups.Behavior | protected |
m_fVersion | sortie.data.funcgroups.Behavior | protected |
m_iBehaviorSetupType | sortie.data.funcgroups.Behavior | protected |
m_iCrowdingEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iDamageEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iInfectionEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iListPosition | sortie.data.funcgroups.Behavior | protected |
m_iNCITerm | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iNEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iPrecipEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iShadingEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iSizeEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_iStochasticGrowthMethod | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | protected |
m_iTempEffect | sortie.data.funcgroups.nci.NCIMasterBase | protected |
m_oManager | sortie.data.funcgroups.Behavior | protected |
m_oParent | sortie.data.funcgroups.Behavior | protected |
m_sDescriptor | sortie.data.funcgroups.Behavior | protected |
m_sHelpFileString | sortie.data.funcgroups.Behavior | protected |
m_sParFileTag | sortie.data.funcgroups.Behavior | protected |
m_sXMLRootString | sortie.data.funcgroups.Behavior | protected |
mp_bCanApplyToTreeType | sortie.data.funcgroups.Behavior | protected |
mp_fNCIMaxPotentialGrowth | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | protected |
mp_fRandParameter | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | protected |
mp_iCrowdingEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iDamageEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iGridsAppliesTo | sortie.data.funcgroups.Behavior | protected |
mp_iInfectionEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iNCITerms | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iNEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iPrecipEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iShadingEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iSizeEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_iTempEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_oAllData | sortie.data.funcgroups.Behavior | protected |
mp_oEffects | sortie.data.funcgroups.nci.NCIMasterBase | protected |
mp_oNewTreeDataMembers | sortie.data.funcgroups.Behavior | protected |
mp_oTreesAppliesTo | sortie.data.funcgroups.Behavior | protected |
NCIMasterBase(GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpString) | sortie.data.funcgroups.nci.NCIMasterBase | |
NCIMasterQuadratGrowth(GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString) | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | |
readDataFromDisplay(ArrayList< BehaviorParameterDisplay > oData, TreePopulation oPop) | sortie.data.funcgroups.nci.NCIMasterBase | |
readXMLParentTag(String sXMLTag, Attributes oAttributes) | sortie.data.funcgroups.Behavior | |
setCanApplyTo(int iType, boolean bCanApply) | sortie.data.funcgroups.Behavior | |
setCrowdingEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setDamageEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setDescriptor(String s) | sortie.data.funcgroups.Behavior | |
setInfectionEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setListPosition(int iListPosition) | sortie.data.funcgroups.Behavior | |
setNCITerm(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setNitrogenEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setPrecipitationEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setShadingEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setSingleValue(ModelData oDataMember, Object oData) | sortie.data.funcgroups.Behavior | protected |
setSingleValueByXMLTag(String sXMLTag, String sXMLParentTag, Attributes oAttributes, Object oData) | sortie.data.funcgroups.nci.NCIMasterBase | |
setSizeEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setTemperatureEffect(String sChoice) | sortie.data.funcgroups.nci.NCIMasterBase | |
setupLikeOldBANCI() | sortie.data.funcgroups.nci.NCIMasterBase | |
setupLikeOldNCI() | sortie.data.funcgroups.nci.NCIMasterBase | |
setupLikeOldNCIJuvenile() | sortie.data.funcgroups.nci.NCIMasterBase | |
setupLikeOldWeibullClimate() | sortie.data.funcgroups.nci.NCIMasterBase | |
setupLikeOldWeibullClimateQuadrat() | sortie.data.funcgroups.nci.NCIMasterBase | |
setVectorValueByXMLTag(String sXMLTag, String sXMLParentTag, ArrayList< String > p_oData, String[] p_sChildXMLTags, boolean[] p_bAppliesTo, Attributes oParentAttributes, Attributes[] p_oAttributes) | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | |
setVectorValues(ModelVector oData, Float[] p_fValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector oData, Float[] p_fValuesToSet) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector oData, Double[] p_fValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector oData, Double[] p_fValuesToSet) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector oData, Integer[] p_iValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector oData, String[] p_sValuesToSet) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector oData, String[] p_sValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector oData, Integer[] p_iValuesToSet) | sortie.data.funcgroups.Behavior | static |
setVectorValues(ModelVector p_oData, ArrayList< String > p_oValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
usesIndividuals() | sortie.data.funcgroups.nci.NCIMasterBase | |
validate() | sortie.data.funcgroups.Behavior | |
validateData(TreePopulation oPop) | sortie.data.funcgroups.nci.NCIMasterQuadratGrowth | |
writeBehaviorNode(BufferedWriter out, TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
writeDataToFile(BufferedWriter ojOut, ModelData oData) | sortie.data.funcgroups.Behavior | static |
writeParametersToTextFile(FileWriter jOut, TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
writeSpeciesSpecificValue(BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
writeSpeciesSpecificValue(BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop, boolean[] p_bFlags) | sortie.data.funcgroups.Behavior | |
writeXML(BufferedWriter jOut, TreePopulation oPop) | sortie.data.funcgroups.nci.NCIMasterBase | |