| addDataObjectToDisplayArrays(ModelData p_oDataObject, ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
| addDataToArray(Object[][] p_oExistingArray, Object[] p_oAddArray) | sortie.data.funcgroups.Behavior | static |
| addDetailedGridSettings(DetailedGridSettings oTreeSettings) | sortie.data.funcgroups.output.DetailedOutput | |
| addDetailedOutputSubplot(String sName) | sortie.data.funcgroups.output.DetailedOutput | |
| addDetailedOutputSubplot(Subplot oSubplot) | sortie.data.funcgroups.output.DetailedOutput | |
| addDetailedTreeSettings(DetailedTreeSettings oTreeSettings) | sortie.data.funcgroups.output.DetailedOutput | |
| addGrid(Grid oGrid, boolean bReplace) | sortie.data.funcgroups.Behavior | |
| addRequiredData(ModelData oData) | sortie.data.funcgroups.Behavior | |
| addSpeciesTypeCombo(SpeciesTypeCombo oCombo) | sortie.data.funcgroups.Behavior | |
| Behavior(GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString, String sHelpFileString) | sortie.data.funcgroups.Behavior | |
| boolArraysEqual(boolean[] p_bArrayOne, boolean[] p_bArrayTwo) | sortie.data.funcgroups.Behavior | protectedstatic |
| callSetupDialog(JDialog jParent, MainWindow oMain) | sortie.data.funcgroups.output.DetailedOutput | |
| canBeDuplicated() | sortie.data.funcgroups.Behavior | |
| changeGridSpecies(int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) | sortie.data.funcgroups.output.DetailedOutput | private |
| changeOfPlotResolution(float fOldX, float fOldY, float fNewX, float fNewY) | sortie.data.funcgroups.output.DetailedOutput | |
| changeOfSpecies(int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) | sortie.data.funcgroups.output.DetailedOutput | |
| changeOfSpeciesName(String sOldSpecies, String sNewSpecies) | sortie.data.funcgroups.Behavior | |
| changeTreeSpecies(int iOldNumSpecies, int[] p_iIndexer, String[] p_sNewSpecies) | sortie.data.funcgroups.output.DetailedOutput | private |
| clearDetailedDeadTreeSettings() | sortie.data.funcgroups.output.DetailedOutput | |
| clearDetailedGridSettings() | sortie.data.funcgroups.output.DetailedOutput | |
| clearDetailedLiveTreeSettings() | sortie.data.funcgroups.output.DetailedOutput | |
| clearDetailedOutputSubplots() | sortie.data.funcgroups.output.DetailedOutput | |
| clearSpeciesTypeCombos() | sortie.data.funcgroups.Behavior | |
| copySpecies(int iSpeciesCopyFrom, int iSpeciesCopyTo) | sortie.data.funcgroups.output.DetailedOutput | |
| deleteSpeciesTypeCombo(int iIndex) | sortie.data.funcgroups.Behavior | |
| deleteSpeciesTypeCombo(SpeciesTypeCombo oCombo) | sortie.data.funcgroups.Behavior | |
| DETAILED_OUTPUT_EXTENSION | sortie.data.funcgroups.output.DetailedOutput | static |
| DetailedOutput(GUIManager oManager, BehaviorTypeBase oParent, String sDescriptor, String sParFileTag, String sXMLRootString) | sortie.data.funcgroups.output.DetailedOutput | |
| endOfParameterFileRead() | sortie.data.funcgroups.Behavior | |
| ensureSize(ArrayList<?> list, int size) | sortie.data.funcgroups.Behavior | static |
| findObjectByDescriptor(String sDescriptor) | sortie.data.funcgroups.Behavior | |
| findObjectByXMLTag(String sXMLTag) | sortie.data.funcgroups.Behavior | |
| formatBlankHeaderRow(Object[][] p_oTable) | sortie.data.funcgroups.Behavior | static |
| formatComboBoxString(ModelEnum oToFormat) | sortie.data.funcgroups.Behavior | static |
| formatDataAsComboBox(Object[][] p_oExisting, ModelEnum oToFormat) | sortie.data.funcgroups.Behavior | static |
| formatDataForDisplay(TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
| formatDataForTable(Object[][] p_oExisting, ModelFloat oToFormat) | sortie.data.funcgroups.Behavior | static |
| formatDataForTable(Object[][] p_oExisting, ModelInt oToFormat) | sortie.data.funcgroups.Behavior | static |
| formatDataForTable(Object[][] p_oExisting, ModelString oToFormat) | sortie.data.funcgroups.Behavior | static |
| formatDataForTable(Object[][] p_oExisting, ModelVector oToFormat) | sortie.data.funcgroups.Behavior | static |
| formatDataForTable(Object[][] p_oExisting, ModelVector oToFormat, boolean[] p_bWhichSpecies) | sortie.data.funcgroups.Behavior | static |
| formatSpeciesHeaderRow(boolean[] p_bUsed, TreePopulation oPop) | sortie.data.funcgroups.Behavior | static |
| formatTable(ArrayList< ModelData > p_oSingles, ArrayList< ArrayList< SpeciesSpecific >> p_oSpeciesSpecific, TreePopulation oPop) | sortie.data.funcgroups.Behavior | protected |
| getAppliedToForDisplay(TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
| getDataObject(int iInd) | sortie.data.funcgroups.Behavior | |
| getDescriptor() | sortie.data.funcgroups.Behavior | |
| getDetailedDeadTreeSetting(int iIndex) | sortie.data.funcgroups.output.DetailedOutput | |
| getDetailedGridSetting(int iIndex) | sortie.data.funcgroups.output.DetailedOutput | |
| getDetailedLiveTreeSetting(int iIndex) | sortie.data.funcgroups.output.DetailedOutput | |
| getDetailedOutputFileName() | sortie.data.funcgroups.output.DetailedOutput | |
| getDetailedSubplot(int iIndex) | sortie.data.funcgroups.output.DetailedOutput | |
| getDetailedSubplotXCellLength() | sortie.data.funcgroups.output.DetailedOutput | |
| getDetailedSubplotYCellLength() | sortie.data.funcgroups.output.DetailedOutput | |
| getGrid(int iIndex) | sortie.data.funcgroups.Behavior | |
| getGUIManager() | sortie.data.funcgroups.Behavior | |
| getHelpFileString() | sortie.data.funcgroups.Behavior | |
| getListPosition() | sortie.data.funcgroups.Behavior | |
| getMinimumVersion() | sortie.data.funcgroups.Behavior | |
| getMustHaveTrees() | sortie.data.funcgroups.Behavior | |
| getNewTreeDataMember(int iIndex) | sortie.data.funcgroups.Behavior | |
| getNumberNewDataMembers() | sortie.data.funcgroups.Behavior | |
| getNumberOfCombos() | sortie.data.funcgroups.Behavior | |
| getNumberOfDataObjects() | sortie.data.funcgroups.Behavior | |
| getNumberOfDetailedDeadTreeSettings() | sortie.data.funcgroups.output.DetailedOutput | |
| getNumberOfDetailedGridSettings() | sortie.data.funcgroups.output.DetailedOutput | |
| getNumberOfDetailedLiveTreeSettings() | sortie.data.funcgroups.output.DetailedOutput | |
| getNumberOfDetailedSubplots() | sortie.data.funcgroups.output.DetailedOutput | |
| getNumberOfGrids() | sortie.data.funcgroups.Behavior | |
| getNumberOfRequiredDataObjects() | sortie.data.funcgroups.Behavior | |
| getParameterFileBehaviorName() | sortie.data.funcgroups.Behavior | |
| getRequiredData(int iIndex) | sortie.data.funcgroups.Behavior | |
| getSetupType() | sortie.data.funcgroups.Behavior | |
| getSpeciesTypeCombo(int iIndex) | sortie.data.funcgroups.Behavior | |
| getTreePopulation() | sortie.data.funcgroups.output.DetailedOutput | |
| getVersion() | sortie.data.funcgroups.Behavior | |
| getWhichSpeciesUsed(TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
| getXMLParametersRoot() | sortie.data.funcgroups.Behavior | |
| inactivate() | sortie.data.funcgroups.output.DetailedOutput | |
| isActive() | sortie.data.funcgroups.output.DetailedOutput | |
| m_bCanBeDuplicated | sortie.data.funcgroups.Behavior | protected |
| m_bIsActive | sortie.data.funcgroups.output.DetailedOutput | private |
| m_bMustHaveTrees | sortie.data.funcgroups.Behavior | |
| m_fDetailedSubplotXCellLength | sortie.data.funcgroups.output.DetailedOutput | protected |
| m_fDetailedSubplotYCellLength | sortie.data.funcgroups.output.DetailedOutput | protected |
| m_fMinVersion | sortie.data.funcgroups.Behavior | protected |
| m_fVersion | sortie.data.funcgroups.Behavior | protected |
| m_iBehaviorSetupType | sortie.data.funcgroups.Behavior | protected |
| m_iListPosition | sortie.data.funcgroups.Behavior | protected |
| m_oCurrentDetailedSettings | sortie.data.funcgroups.output.DetailedOutput | protected |
| m_oCurrentSubplot | sortie.data.funcgroups.output.DetailedOutput | protected |
| m_oManager | sortie.data.funcgroups.Behavior | protected |
| m_oParent | sortie.data.funcgroups.Behavior | protected |
| m_oPop | sortie.data.funcgroups.output.DetailedOutput | private |
| m_sDescriptor | sortie.data.funcgroups.Behavior | protected |
| m_sDetailedOutputFilename | sortie.data.funcgroups.output.DetailedOutput | protected |
| m_sHelpFileString | sortie.data.funcgroups.Behavior | protected |
| m_sParFileTag | sortie.data.funcgroups.Behavior | protected |
| m_sXMLRootString | sortie.data.funcgroups.Behavior | protected |
| mp_bCanApplyToTreeType | sortie.data.funcgroups.Behavior | protected |
| mp_iGridsAppliesTo | sortie.data.funcgroups.Behavior | protected |
| mp_oAllData | sortie.data.funcgroups.Behavior | protected |
| mp_oDetailedDeadTreeSaveSettings | sortie.data.funcgroups.output.DetailedOutput | protected |
| mp_oDetailedGridSaveSettings | sortie.data.funcgroups.output.DetailedOutput | protected |
| mp_oDetailedLiveTreeSaveSettings | sortie.data.funcgroups.output.DetailedOutput | protected |
| mp_oDetailedOutputSubplots | sortie.data.funcgroups.output.DetailedOutput | protected |
| mp_oNewTreeDataMembers | sortie.data.funcgroups.Behavior | protected |
| mp_oTreesAppliesTo | sortie.data.funcgroups.Behavior | protected |
| readDataFromDisplay(ArrayList< BehaviorParameterDisplay > oData, TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
| readXMLParentTag(String sXMLTag, Attributes oAttributes) | sortie.data.funcgroups.output.DetailedOutput | |
| setCanApplyTo(int iType, boolean bCanApply) | sortie.data.funcgroups.Behavior | |
| setDescriptor(String s) | sortie.data.funcgroups.Behavior | |
| setDetailedOutputFileName(String sFilename) | sortie.data.funcgroups.output.DetailedOutput | |
| setDetailedSubplotXCellLength(float fLength) | sortie.data.funcgroups.output.DetailedOutput | |
| setDetailedSubplotYCellLength(float fLength) | sortie.data.funcgroups.output.DetailedOutput | |
| setListPosition(int iListPosition) | sortie.data.funcgroups.Behavior | |
| setSingleValue(ModelData oDataMember, Object oData) | sortie.data.funcgroups.Behavior | protected |
| setSingleValueByXMLTag(String sXMLTag, String sXMLParentTag, Attributes oAttributes, Object oData) | sortie.data.funcgroups.output.DetailedOutput | |
| setVectorValueByXMLTag(String sXMLTag, String sXMLParentTag, ArrayList< String > p_oData, String[] p_sChildXMLTags, boolean[] p_bAppliesTo, Attributes oParentAttributes, Attributes[] p_oAttributes) | sortie.data.funcgroups.output.DetailedOutput | |
| setVectorValues(ModelVector oData, Float[] p_fValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector oData, Float[] p_fValuesToSet) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector oData, Double[] p_fValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector oData, Double[] p_fValuesToSet) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector oData, Integer[] p_iValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector oData, String[] p_sValuesToSet) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector oData, String[] p_sValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector oData, Integer[] p_iValuesToSet) | sortie.data.funcgroups.Behavior | static |
| setVectorValues(ModelVector p_oData, ArrayList< String > p_oValuesToSet, boolean[] p_bAppliesTo) | sortie.data.funcgroups.Behavior | static |
| validate() | sortie.data.funcgroups.Behavior | |
| validateData(TreePopulation oPop) | sortie.data.funcgroups.output.DetailedOutput | |
| verifyTreeMember(DataMember oDataMember, int iSpecies, int iType) | sortie.data.funcgroups.output.DetailedOutput | private |
| writeBehaviorNode(BufferedWriter out, TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
| writeDataToFile(BufferedWriter ojOut, ModelData oData) | sortie.data.funcgroups.Behavior | static |
| writeParametersToTextFile(FileWriter jOut, TreePopulation oPop) | sortie.data.funcgroups.output.DetailedOutput | |
| writeSpeciesSpecificValue(BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop) | sortie.data.funcgroups.Behavior | |
| writeSpeciesSpecificValue(BufferedWriter jOut, ModelVector p_oData, TreePopulation oPop, boolean[] p_bFlags) | sortie.data.funcgroups.Behavior | |
| writeXML(BufferedWriter jOut, TreePopulation oPop) | sortie.data.funcgroups.output.DetailedOutput | |
